Question: Providing specific regions to Diffbind
gravatar for sergio.espeso-gil
19 months ago by
New York
sergio.espeso-gil0 wrote:

Hi community!

I am providing to Diffbind a genomic region list to be analyzed (not peaks, just regions of interest). Although the results are good, I want to avoid Diffbind to merge some of the regions that actually overlap. Can I do that? I have trying so far with no success. Any help?



ADD COMMENTlink modified 19 months ago by Rory Stark2.5k • written 19 months ago by sergio.espeso-gil0
gravatar for Rory Stark
19 months ago by
Rory Stark2.5k
CRUK, Cambridge, UK
Rory Stark2.5k wrote:

Hello Sergio-

Currently, DiffBind will always merge overlapping peaks. Being able to retain overlapping peaks is a feature that has been requested more than once and is on our "to consider" list for a future release. We may be doing it soon as part of an effort to standardise on using summarizeOverlaps for all counting.



ADD COMMENTlink written 19 months ago by Rory Stark2.5k

Thanks Rory


ADD REPLYlink written 17 months ago by sergio.espeso-gil0
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