GDCPrepare function returns a function
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jvwong • 0
@jvwong-11844
Last seen 8.1 years ago

Last working version for 'GDCPrepare()' was 2.0.13. 

Current version 2.2.0 and 2.2.5  both GDCPrepare() return a function.

```

function (x, df1, df2, ncp, log = FALSE)

{
  if (missing(ncp)) 
    .Call(C_df, x, df1, df2, log)
  else .Call(C_dnf, x, df1, df2, ncp, log)
}

```

TCGAbiolinks • 1.2k views
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Could you send your code with the query please? So I can see what is happening?
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This happens for microRNA datasets. For example,

miRNAquery <- GDCquery(project = "TCGA-SKCM",
                       data.category = "Transcriptome Profiling",
                       data.type = "miRNA Expression Quantification")
GDCdownload(miRNAquery)
miRNAmatrix <- GDCprepare(miRNAquery)

returns the function shown above.

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@tiago-chedraoui-silva-8877
Last seen 4.3 years ago
Brazil - University of São Paulo/ Los A…

There was I bug. Thanks for reporting. I just solved it and it should be in bioconductor in two days.

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