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moonkinwen
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@moonkinwen-11968
Last seen 8.0 years ago
I used an example code readGEORawFile from "minfi" refrence manual and get en error
Any help will be valuable. Thanks in advance.
library(minfi) gmset=readGEORawFile("GSE29290_Matrix_Signal.txt",Uname="Signal_A",Mname="Signal_B",sep="\t")
Error in FUN(X[[i]], ...) : assay colnames() must be NULL or equal colData rownames() |
R version 3.3.2 (2016-10-31) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) locale: [1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936 [3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C [5] LC_TIME=Chinese (Simplified)_China.936 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base other attached packages: [1] IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.0 minfi_1.20.0 [3] bumphunter_1.14.0 locfit_1.5-9.1 [5] iterators_1.0.8 foreach_1.4.3 [7] Biostrings_2.42.1 XVector_0.14.0 [9] SummarizedExperiment_1.4.0 GenomicRanges_1.26.1 [11] GenomeInfoDb_1.10.1 IRanges_2.8.1 [13] S4Vectors_0.12.1 Biobase_2.34.0 [15] BiocGenerics_0.20.0 BiocInstaller_1.24.0 loaded via a namespace (and not attached): [1] mclust_5.2 base64_2.0 Rcpp_0.12.8 lattice_0.20-34 [5] Rsamtools_1.26.1 digest_0.6.10 R6_2.2.0 plyr_1.8.4 [9] RSQLite_1.1 httr_1.2.1 zlibbioc_1.20.0 GenomicFeatures_1.26.0 [13] data.table_1.9.8 annotate_1.52.0 Matrix_1.2-7.1 preprocessCore_1.36.0 [17] splines_3.3.2 BiocParallel_1.8.1 stringr_1.1.0 RCurl_1.95-4.8 [21] biomaRt_2.30.0 rtracklayer_1.34.1 multtest_2.30.0 pkgmaker_0.22 [25] openssl_0.9.5 GEOquery_2.40.0 quadprog_1.5-5 codetools_0.2-15 [29] matrixStats_0.51.0 XML_3.98-1.5 reshape_0.8.6 GenomicAlignments_1.10.0 [33] MASS_7.3-45 bitops_1.0-6 grid_3.3.2 nlme_3.1-128 [37] xtable_1.8-2 registry_0.3 DBI_0.5-1 magrittr_1.5 [41] stringi_1.1.2 genefilter_1.56.0 doRNG_1.6 limma_3.30.6 [45] nor1mix_1.2-2 RColorBrewer_1.1-2 siggenes_1.48.0 tools_3.3.2 [49] illuminaio_0.16.0 rngtools_1.2.4 survival_2.40-1 AnnotationDbi_1.36.0 [53] beanplot_1.2 memoise_1.0.0