Showing : minfi • reset
0
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3
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1.3k
views
Merging EPICV1 and V2 betas
minfiDataEPIC minfi
updated 8 months ago by • 0 • written 11 months ago by • 0
1
vote
2
replies
889
views
normalizatino of dna methylation EPIC data
DNA minfiData minfiDataEPIC DNAMethylation minfi
12 months ago user_bioinfo • 0
4
votes
8
replies
2.3k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate minfi
14 months ago • updated 12 months ago xiaofeiwang198266 • 0
1
vote
4
replies
1.1k
views
Handling Epic Array Data
minfi
15 months ago Melisa Tecik • 0
2
votes
2
replies
909
views
preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
15 months ago Rakesh • 0
2
votes
5
replies
1.2k
views
dmpFinder for other objects
methylset minfi dmpFinder betaHMM beta
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
2
replies
1.1k
views
DMPs enrichment for MOUSE DNA methylation array
minfi mCSEA missme missMethyl
updated 18 months ago by • 0 • written 18 months ago by • 0
4
votes
12
replies
6.6k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 19 months ago by ▴ 230 • written 2.3 years ago by ▴ 20
0
votes
1
reply
842
views
minfi - bumphunter value problem
bumphunter minfiData minfi bumphun
updated 19 months ago by 68k • written 19 months ago by • 0
0
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0
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829
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
20 months ago pcibin • 0
0
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2
replies
1.4k
views
Epicv2 conversion fail
minfi
20 months ago Alex • 0
2
votes
4
replies
3.7k
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 7 months ago by • 0 • written 21 months ago by • 0
1
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4
replies
1.0k
views
minfi::read.metharray.exp
minfiData minfi
updated 22 months ago by ▴ 780 • written 22 months ago by • 0
0
votes
4
replies
1.2k
views
Minfi - estimatecellscount
min minfi
updated 22 months ago by 68k • written 23 months ago by • 0
0
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0
replies
842
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
23 months ago Felix • 0
0
votes
1
reply
722
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 24 months ago by 68k • written 24 months ago by • 0
0
votes
7
replies
1.4k
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
1
vote
2
replies
3.8k
views
EPIC array hg38 annotation?
minfi DMRcate
2.0 years ago mycetes • 0
0
votes
0
replies
1.5k
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
2.2 years ago kyj2226 • 0
3
votes
2
replies
1.6k
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
2.2 years ago kyj2226 • 0
0
votes
1
reply
967
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
votes
5
replies
1.9k
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
2.4 years ago dorota.komar • 0
0
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2
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1.7k
views
minfi differential methylation analysis errors
minfi
2.4 years ago matthew.sinton • 0
0
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3
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1.6k
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
0
votes
14
replies
4.9k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 2.1 years ago by • 0 • written 2.5 years ago by • 0
1
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2
replies
1.6k
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
written 2.5 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 2.8 years ago by ▴ 780 • written 2.8 years ago by ▴ 10
0
votes
2
replies
1.2k
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 23 months ago by • 0 • written 2.8 years ago by • 0
0
votes
1
reply
1.1k
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.9 years ago by 53k • written 2.9 years ago by • 0
0
votes
0
replies
850
views
cpgCollapse error
450K blockfinder cpgCollapse minfi
2.9 years ago edward.esiribloom • 0
6
votes
6
replies
11k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 16 months ago by • 0 • written 2.9 years ago by ▴ 50
0
votes
1
reply
1.2k
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
4
replies
2.1k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
1
vote
3
replies
1.8k
views
Analysing Genome Studio .txt files with minfi
minfi
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
5
replies
2.4k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 3.0 years ago by • 0
0
votes
1
reply
1.5k
views
Minfi::read.metharray.sheet, problem with pattern defined in non-local csv file
PatternLogic read.metharray.sheet list.files minfi
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
2
votes
3
replies
2.3k
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 3.1 years ago by ▴ 40 • written 3.1 years ago by • 0
0
votes
1
reply
1.7k
views
minfi read.metharray.sheet error
minfi
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
1
reply
1.9k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile noob Normalization minfi minfiDataEPIC
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
0
replies
1.1k
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
3.5 years ago calen.p.ryan • 0
0
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0
replies
1.1k
views
Error: 'bumphunter()' only supports matrix-backed minfi objects.
bumphunter minfi genomi
3.7 years ago runye • 0
0
votes
1
reply
1.6k
views
what is the format of DMPfinder in minfi package
minfi
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
0
votes
3
replies
1.9k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.9 years ago • updated 3.8 years ago ramonfallon ▴ 20
0
votes
2
replies
3.9k
views
Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 3.8 years ago by • 0 • written 10.4 years ago by ▴ 10
0
votes
0
replies
1.7k
views
Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
3.8 years ago octaviompa • 0
0
votes
0
replies
972
views
Minfi package: controlStripPlot colors
minfi
4.0 years ago Rebecca • 0
0
votes
1
reply
1.6k
views
Over 800,000 probes failing to meet Detection P-value - minfi
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 failingprobes detectionP minfi
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
0
votes
9
replies
4.4k
views
clarification about bumphunter value output
minfi bumphunter
updated 2.8 years ago by • 0 • written 8.0 years ago by • 0
0
votes
1
reply
1.4k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC #SexPrediction minfi
updated 4.4 years ago by ▴ 780 • written 4.4 years ago by • 0
0
votes
0
replies
1.4k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
4.5 years ago ponche_de_kiwi • 0
281 results • Page 1 of 6
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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