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Question: TCGA Lung Cancer Pulmonary Function Test Data
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gravatar for zyr123
11 months ago by
zyr1230
zyr1230 wrote:

Hi,

I am new to TCGA dataset. Does anyone know where I can find and download the pulmonary function test (PFT) data for the LUSC and LUAD lung cancers in TCGA?

Thanks in advance!

ADD COMMENTlink modified 11 months ago • written 11 months ago by zyr1230

Hi,

Take a look at the TCGAbiolinks package and the support tag related to it in this website. I've been using it a bit myself as you'll note. If you want the gene or exon counts, the coverage bigwigs or the exon-exon junctions check recount: https://jhubiostatistics.shinyapps.io/recount/ and http://bioconductor.org/packages/release/bioc/html/recount.html.

Best,

Leonardo

ADD REPLYlink written 11 months ago by Leonardo Collado Torres560
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