ChIP on Chip normalization | Shorth
0
0
Entering edit mode
@david-lee-duewer-941
Last seen 9.7 years ago
>> effectively one-sided. > "midpoint of the shorth" as a centrality parameter ... > it is often less susceptible to asymetric tails than mean or median The shorth (shortest half) IS a less susceptible location estimate than the median to OUTLIERS that asymmetrically contaminate a symmetric base distribution. This does NOT imply that the midpoint of the shorth is an adequate centrality estimate for asymmetric base distributions. Transformations (log is most obvious) that move the base distribution towards symmetry can aid figuring out a useful, stable location estimate. (In non-genechip applications, I've found that "median of the shorth" is "better" than midpoint, but that doesn't say that it's "good"...) The shorth is, however, a wizard "best guesstimate" of the "if it wasn't contaminated by outliers" interquartile range (IQR) for use with robust estimation of DISPERSION. D David Lee Duewer National Institute of Standards and Technology 100 Bureau Drive Stop 8390 Gaithersburg, MD 20899-8390 USA [[alternative HTML version deleted]]
• 636 views
ADD COMMENT

Login before adding your answer.

Traffic: 848 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6