How to average DESeq2’s median of ratios from replications
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Yosapol • 0
@40f341c9
Last seen 13 days ago
Netherlands

Dear all,

In DESeq2, DESeq2 used the median of ratios for normalization count, instead of CPM and TPM I have three replication for EMT and EWT. Is it possible to average EMT1,2,3 to represent one normalization count number?

Thanks in advance

Best regards,enter image description here

crossed post:https://www.biostars.org/p/9468094/

DESeq2 • 83 views
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@mikelove
Last seen 2 hours ago
United States

DESeq2 doesn't have functionality to create averages but you can do it yourself easily with: rowMeans, indexing [,] and counts(dds, normalized=TRUE).

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Dear Michael,

Thank you very much your help.

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