Hi, I'm trying to install KEGGprofile to do analysis in R but it says it's not available for BioConductor 3.13 yet. But the website says it is. sessionInfo results might be a little weird since I installed a bunch of other BioConductor packages today.
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://cran.pacha.dev
Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installing package(s) 'KEGGprofile'
Old packages: 'e1071', 'stringi'
Update all/some/none? [a/s/n]: n
Warning message:
In .inet_warning(msg) :
package ‘KEGGprofile’ is not available for Bioconductor version '3.13'
sessionInfo( ) R version 4.1.0 (2021-05-18) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows 10 x64 (build 19041)
Matrix products: default
locale:
[1] LC_COLLATE=English_Canada.1252 LC_CTYPE=English_Canada.1252
[3] LC_MONETARY=English_Canada.1252 LC_NUMERIC=C
[5] LC_TIME=English_Canada.1252
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] devtools_2.4.1 usethis_2.0.1 limma_3.48.0
loaded via a namespace (and not attached):
[1] rstudioapi_0.13 magrittr_2.0.1 pkgload_1.2.1
[4] R6_2.5.0 rlang_0.4.11 fastmap_1.1.0
[7] tools_4.1.0 pkgbuild_1.2.0 sessioninfo_1.1.1
[10] cli_2.5.0 withr_2.4.2 ellipsis_0.3.2
[13] remotes_2.3.0 rprojroot_2.0.2 lifecycle_1.0.0
[16] crayon_1.4.1 processx_3.5.2 purrr_0.3.4
[19] BiocManager_1.30.15 callr_3.7.0 fs_1.5.0
[22] ps_1.6.0 curl_4.3.1 testthat_3.0.2
[25] memoise_2.0.0 glue_1.4.2 cachem_1.0.5
[28] compiler_4.1.0 desc_1.3.0 prettyunits_1.1.1
```
Hi Sophie, I believe this issue is known. Can you try the temporary fix suggested here? - Avoid upgrading BiocManager to 1.30.13; fix proposed Kind regards, Kevin