unable to install "org.Hs.eg.db"
1
0
Entering edit mode
@c595c86e
Last seen 3.3 years ago
United States

Unable to install "org.Hs.eg.db" The problematic file, Rterm,exe is found in: C:\Program Files\R\R-4.1.0\bin\i386, but not elsewhere.


> if (!requireNamespace("BiocManager", quietly = TRUE))
+     install.packages("BiocManager")
> 
> BiocManager::install("org.Hs.eg.db")
Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installing package(s) 'org.Hs.eg.db'
installing the source package ‘org.Hs.eg.db’

trying URL 'https://bioconductor.org/packages/3.13/data/annotation/src/contrib/org.Hs.eg.db_3.13.0.tar.gz'
Content type 'application/x-gzip' length 83002050 bytes (79.2 MB)
downloaded 79.2 MB

'"C:\PROGRA~1\R\R-41~1.0/bin/x64/Rterm.exe"' is not recognized as an internal or external command,
operable program or batch file.

# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
R version 4.1.0 (2021-05-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.15 compiler_4.1.0      tools_4.1.0         parallel_4.1.0      Biobase_2.52.0      BiocGenerics_0.38.0
Rterm.exe BiocManager org.Hs.eg.db • 1.4k views
ADD COMMENT
0
Entering edit mode

I am also faced same issue!!

ADD REPLY
1
Entering edit mode
@james-w-macdonald-5106
Last seen 1 day ago
United States

If you don't have an Rterm.exe in C:\Program Files\R\R-4.1.0\bin\x64 then something is probably borked with your installation. You might try re-installing and see if that helps.

ADD COMMENT

Login before adding your answer.

Traffic: 633 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6