Showing : org.Hs.eg.db • reset
0
votes
1
reply
123
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 7 weeks ago by 63k • written 7 weeks ago by • 0
0
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2
replies
240
views
Download package ' org.Hs.eg.db 'when a problem emerged
org.Hs.eg.db
updated 3 months ago by • 0 • written 3 months ago by • 0
2
votes
3
replies
328
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 4 months ago by 63k • written 4 months ago by • 0
0
votes
1
reply
265
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 9 months ago by 47k • written 9 months ago by • 0
0
votes
3
replies
502
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
10 months ago • updated 9 months ago sandmann.t ▴ 70
1
vote
1
reply
644
views
org.Hs.eg.db，Error: could not find function ".libPath"
org.Hs.eg.db
updated 13 months ago by ★ 3.0k • written 13 months ago by • 0
5
votes
13
replies
2.2k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
4
votes
6
replies
1.1k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 15 months ago by 47k • written 15 months ago by • 0
1
vote
3
replies
1.8k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
18 months ago 2041792073 • 0
0
votes
1
reply
756
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 18 months ago by 3.5k • written 18 months ago by • 0
1
vote
2
replies
663
views
The RSQLite package fails to be installed
RSQLite org.Hs.eg.db
21 months ago chenghaomai • 0
1
vote
2
replies
796
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 24 months ago by 63k • written 24 months ago by • 0
0
votes
3
replies
633
views
Issue "one-to-many" with org.Hs.eg.db
org.Hs.eg.db
updated 2.1 years ago by ★ 3.6k • written 2.1 years ago by • 0
1
vote
2
replies
863
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
2.1 years ago Rodrigo • 0
0
votes
1
reply
691
views
can NOT library ‘org.Hs.eg.db’
org.Hs.eg.db
updated 2.1 years ago by ★ 6.0k • written 2.1 years ago by ▴ 30
44
votes
29
replies
8.7k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 2.1 years ago by ▴ 130 • written 2.1 years ago by ▴ 160
6
votes
15
replies
5.0k
views
Couldn't load org.Hs.eg.db
org.Hs.eg.db
updated 2.1 years ago by • 0 • written 2.1 years ago by ▴ 30
3
votes
3
replies
1.6k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
2.2 years ago sgupt46 • 0
3
votes
2
replies
771
views
Error when using org.Hs.eg.db package
org.Hs.eg.db
updated 2.2 years ago by 63k • written 2.2 years ago by • 0
0
votes
4
replies
2.9k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
2.2 years ago Eslam • 0
0
votes
1
reply
1.0k
views
problem of install packages "org.Hs.eg.db"
org.Hs.eg.db
updated 2.3 years ago by 25k • written 2.3 years ago by • 0
11
votes
13
replies
2.4k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
2.5 years ago • updated 2.3 years ago rohitsatyam102 ▴ 20
0
votes
0
replies
434
views
Regarding Genome versions
org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38
2.3 years ago Konstantinos Yeles ▴ 80
4
votes
2
replies
926
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 2.4 years ago by ★ 2.0k • written 2.4 years ago by • 0
5
votes
7
replies
1.7k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 2.4 years ago by 47k • written 2.4 years ago by • 0
2
votes
2
replies
1.7k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 2.4 years ago by ★ 2.0k • written 2.4 years ago by • 0
3
votes
4
replies
1.1k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
2.5 years ago Bine ▴ 20
2
votes
2
replies
1.8k
views
Error while installing "org.Hs.eg.db"
org.Hs.eg.db
2.5 years ago sevencds ▴ 10
2
votes
2
replies
491
views
Annotation: Use of org.Hs.egCHR to map Gene Entrez to Chromosome
org.Hs.egCHR org.Hs.eg.db
2.5 years ago Bine ▴ 20
4
votes
3
replies
1.3k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
2.5 years ago Emilia ▴ 30
0
votes
2
replies
973
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 2.7 years ago by 25k • written 2.7 years ago by • 0
0
votes
1
reply
523
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
1
vote
1
reply
631
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 3.5 years ago by 63k • written 3.5 years ago by • 0
1
vote
6
replies
1.3k
views
why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
org.Hs.eg.db org.Hs.egGO2ALLEGS
updated 11 months ago by • 0 • written 3.8 years ago by • 0
0
votes
1
reply
780
views
org.Hs.eg.db can not be downloaded
org.Hs.eg.db
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
2
votes
5
replies
596
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.0 years ago by 63k • written 4.0 years ago by • 0
4
votes
5
replies
1.1k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 4.2 years ago by 63k • written 4.2 years ago by ▴ 10
3
votes
3
replies
3.8k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 3 months ago by • 0 • written 4.3 years ago by • 0
0
votes
1
reply
1.1k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
4.5 years ago natske ▴ 10
2
votes
1
reply
1.4k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 4.5 years ago by 63k • written 4.5 years ago by • 0
4
votes
3
replies
1.4k
views
Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
org.hs.eg.db
updated 4.8 years ago by 63k • written 4.8 years ago by • 0
0
votes
1
reply
1.0k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
1
vote
1
reply
672
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 5.1 years ago by 63k • written 5.1 years ago by ▴ 120
0
votes
0
replies
1.0k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
5.2 years ago nancyjwahl7 • 0
1
vote
3
replies
11k
views
Converting gene symbol list to Entrez IDs
org.hs.eg.db entrez gene identifiers genesymbols
updated 5.3 years ago by ▴ 70 • written 5.3 years ago by ▴ 10
0
votes
5
replies
1.3k
views
enrichGO returning NA
clusterprofiler org.hs.eg.db
updated 5.4 years ago by ★ 1.2k • written 5.4 years ago by • 0
1
vote
12
replies
2.1k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 5.5 years ago by ★ 3.7k • written 5.5 years ago by ★ 1.1k
3
votes
3
replies
3.1k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger DGEList org.hs.eg.db gene annotation
updated 20 months ago by • 0 • written 5.5 years ago by ▴ 810
0
votes
3
replies
2.1k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db loadNamespace .onLoad dbFileConnect(dbfile)
updated 5.6 years ago by 63k • written 5.6 years ago by • 0
7
votes
3
replies
1.1k
views
Presence of GO annotations for human mitochondrial genes in org.Hs.eg.db?
org.hs.eg.db gene ontology mitochondria
updated 5.6 years ago by 63k • written 5.6 years ago by ▴ 40
50 results • Page 1 of 1
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Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10
Thank you! I think that makes much sense to me.
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Comment: Interpret plot from DiffBind by Chris • 0
Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?
Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k
lfa and gcatest have been reinstated.
Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710
How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…
Votes
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
A: Generating a proper TxDb instance from NCBI GFF Annotations File
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