Entering edit mode
Hi all,
I am working with scPCA R package to do contrastive PCA analysis. The dimension of my background dataset is 73 / 1374 and my target dataset is 445 / 13741. (samples in rows and features in columns) This is my script:
cpca_sim <- scPCA(target = df_scaled[ ,-1],
background = ortholog_scaled,
n_centers = 4,
penalties = 0,
parallel = T)
I am getting this error
Error in result[[njob]] <- value : attempt to select less than one element in OneIndex
Error in serialize(data, node$con, xdr = FALSE) : error writing to connection
Am I doing sth wrong? Can anyone help me to get rid of this error?
Many thanks!
Hi Rahil. Sorry for the delay. This seems to be an issue with parallelization. Have you tried running this code with
parallel = FALSE
? How did you set upBiocParallel
?