Tool for simulating bulk RNA-Seq from single cell data
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@531a58df
Last seen 3 months ago
United States

I have two single cell RNAseq datasets for different conditions (infected and uninfected). Before looking for cell type specific effects of infection I want to compare both datasets as a whole. Is there a tool to simulate bulk RNAseq from single cell data? Or do I simply sum the count for each gene across all cells? I want to do DE analysis for infected and uninfected bulk simulations

Thank you

scRNAseq • 154 views
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@james-w-macdonald-5106
Last seen 13 hours ago
United States

The OSCA book is probably the go-to for most of your scRNA-Seq questions.

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