Question: tximport RSEM error
0
gravatar for ribioinfo
2.8 years ago by
ribioinfo90
ribioinfo90 wrote:

Hi, I would like to import the tables of RSEM, using this command line:

txi.rsem = tximport(l, type = "rsem", reader = read_tsv)

I got this error:

Error in abundanceMat[, i] <- raw[[abundanceCol]] : 
  number of items to replace is not a multiple of replacement length

Could you help me?

Riccardo

tximport • 559 views
ADD COMMENTlink modified 2.8 years ago by Michael Love26k • written 2.8 years ago by ribioinfo90
Answer: tximport RSEM error
0
gravatar for Michael Love
2.8 years ago by
Michael Love26k
United States
Michael Love26k wrote:

What is 'l'? Can you show the top of one of the files:

readLines(l[1], n=10)
ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by Michael Love26k

I changed my answer as 'l' is a vector.

ADD REPLYlink written 2.8 years ago by Michael Love26k

Hi, I found the problem there was a table that had a different number of rows. Now everything works.

Thank you.

Riccardo

ADD REPLYlink written 2.8 years ago by ribioinfo90

Hi Riccardo, How did you solve your problem? I have the same situation with my data in which three of my files have a different number of rows. At this moment, I excluded them just to analyze those which have the same number of rows.

Thanks for your help!

Rodolfo

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by rodolfo.peacewalker0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 447 users visited in the last hour