FlowSOM dependencies - cytoML and flowutils

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jakub.savara • 0

@ddb18a1d

Last seen 3.2 years ago

Czechia

Hello,

I would like to ask for help with installing the FlowSOM plugin. With the new version R, the problem is to install the cytoML, flowUtils, ConsensusClusterPlus packages and other dependencies. I'm also trying to download packages from the site (e.g. https://www.bioconductor.org/packages/release/bioc/src/contrib/flowUtils_1.56.0.tar.gz), however I'm getting 504 ERROR The request could not be satisfied.

Thanks

Jakub

FlowSOM • 1.1k views

ADD COMMENT • link 3.2 years ago jakub.savara • 0

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There seems to be a general problem with the www.bioconductor.org website at the moment, which is stopping the installation of packages. Hopefully this will be resolved shortly.

You can probably get packages installed by using one of the Bioconductor mirrors. You can set that by using chooseBioCmirror(local.only = TRUE) and picking an option.

ADD REPLY • link 3.2 years ago Mike Smith ★ 6.6k

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Thank you very much! Japan mirror worked!

Jakub

ADD REPLY • link 3.2 years ago jakub.savara • 0

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