Get CHR & POS for a list of SNP rs ids (>1M)
1
0
Entering edit mode
Mahan • 0
@mahan-23989
Last seen 17 months ago
Taiwan

I have a list of SNP rs ids (>1M) for which I would like to find respective CHR and POS information on Hg38. Can you please suggest how I can obtain this information? Thanks in advance Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
POS CHR SNP rs • 979 views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 2 hours ago
United States

You need the SNPlocs.Hsapiens.dbSNP144.GRCh38 and BSgenome packages for that. See ?snpsById after loading BSgenome.

ADD COMMENT

Login before adding your answer.

Traffic: 660 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6