Entering edit mode
first time this happened to me:
> Peaks_TSS_all_hgnc<- getBM(filters= "ensembl_transcript_id", attributes=c("ensembl_transcript_id","ensembl_gene_id","hgnc_symbol"),values=Peaks_TSS_all$ClosestTSS_ID,mart= mart)
Batch submitting query [=============================>-] 95% eta: 2mError in getBM(filters = "ensembl_transcript_id", attributes = c("ensembl_transcript_id", :
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1.
Please report this on the support site at http://support.bioconductor.org
> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gtools_3.9.2 biomaRt_2.40.5 grex_1.9 edgeR_3.26.8 limma_3.40.6
loaded via a namespace (and not attached):
[1] Rcpp_1.0.7 compiler_3.6.3 prettyunits_1.1.1
[4] bitops_1.0-7 tools_3.6.3 progress_1.2.2
[7] bit_4.0.4 RSQLite_2.2.8 memoise_2.0.0
[10] lifecycle_1.0.0 lattice_0.20-38 pkgconfig_2.0.3
[13] rlang_0.4.11 DBI_1.1.1 curl_4.3.2
[16] parallel_3.6.3 fastmap_1.1.0 xml2_1.3.2
[19] httr_1.4.2 stringr_1.4.0 vctrs_0.3.8
[22] S4Vectors_0.22.1 IRanges_2.18.3 hms_1.1.0
[25] locfit_1.5-9.4 stats4_3.6.3 bit64_4.0.5
[28] grid_3.6.3 Biobase_2.44.0 R6_2.5.1
[31] AnnotationDbi_1.46.1 tcltk_3.6.3 XML_3.99-0.3
[34] magrittr_2.0.1 blob_1.2.2 ellipsis_0.3.2
[37] BiocGenerics_0.30.0 stringi_1.7.4 RCurl_1.98-1.4
[40] cachem_1.0.6 crayon_1.4.1