Showing : biomaRt • reset
4
votes
7
replies
1.4k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 3 days ago by • 0 • written 5 weeks ago by ▴ 20
0
votes
0
replies
173
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
7 weeks ago Ensembl_Jorge • 0
0
votes
1
reply
284
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 10 weeks ago by ★ 6.6k • written 10 weeks ago by • 0
2
votes
2
replies
1.2k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
10 weeks ago 2044291597 • 0
1
vote
3
replies
921
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by 67k • written 10 months ago by ▴ 10
1
vote
4
replies
802
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 4 weeks ago by • 0 • written 3 months ago by • 0
1
vote
4
replies
656
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
4 months ago kschecht • 0
2
votes
8
replies
1.3k
views
biomaRt getLDS error
biomaRt
4 months ago mark.dunning ▴ 20
1
vote
2
replies
924
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
5 months ago Svitlana ▴ 10
0
votes
0
replies
312
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
5 months ago Reese • 0
0
votes
2
replies
513
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
6 months ago landenshanie ▴ 40
0
votes
0
replies
277
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
6 months ago Abiologist • 0
1
vote
0
replies
397
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
6 months ago Aleena ▴ 30
1
vote
3
replies
519
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 7 months ago by 67k • written 7 months ago by ▴ 30
2
votes
2
replies
764
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 7 months ago by 67k • written 7 months ago by • 0
0
votes
1
reply
434
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
1
reply
914
views
error in mapIds function
mapIds biomaRt
updated 9 months ago by 700 • written 9 months ago by • 0
0
votes
2
replies
1.0k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
9 months ago eefernan5 • 0
3
votes
3
replies
12k
views
How to find rsID with biomaRt in R
biomaRt
updated 10 months ago by 67k • written 3.8 years ago by ▴ 10
0
votes
1
reply
433
views
biomaRt issue
biomaRt
updated 10 months ago by ★ 6.6k • written 10 months ago by • 0
1
vote
5
replies
1.3k
views
BiomaRt download data error
biomaRt
updated 10 months ago by ★ 6.6k • written 10 months ago by • 0
6
votes
9
replies
2.0k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 10 months ago by • 0 • written 10 months ago by • 0
1
vote
1
reply
1.3k
views
Error with biomaRt
biomaRt
updated 10 months ago by ★ 6.6k • written 10 months ago by • 0
4
votes
2
replies
808
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 10 months ago by ★ 4.1k • written 10 months ago by • 0
2
votes
2
replies
1.1k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
10 months ago bd2000 ▴ 30
1
vote
0
replies
446
views
News: Ensembl 111 has been released
Ensembl biomaRt
11 months ago Benjamin ▴ 30
0
votes
2
replies
788
views
Problem with loading ensembl version 105.
biomaRt
11 months ago RC • 0
0
votes
1
reply
1.4k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 12 months ago by 67k • written 12 months ago by • 0
0
votes
3
replies
977
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 12 months ago by ★ 3.4k • written 12 months ago by ▴ 30
4
votes
12
replies
1.6k
views
Ensembl down???
biomaRt
12 months ago bas_work ▴ 30
3
votes
2
replies
722
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
12 months ago henrydionne ▴ 10
1
vote
2
replies
1.5k
views
How to find stop codons for a list of genes
stopcodon biomaRt
12 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.3k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
12 months ago • updated 9 months ago ScafioRuo • 0
12
votes
10
replies
12k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 8 months ago by • 0 • written 13 months ago by ▴ 20
0
votes
3
replies
768
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 13 months ago by 52k • written 13 months ago by • 0
1
vote
4
replies
1.0k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
14 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
6.1k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 14 months ago by 700 • written 2.3 years ago by ▴ 20
0
votes
2
replies
668
views
Biomart - upstream region of 'coding'
biomaRt
updated 15 months ago by ★ 6.6k • written 15 months ago by ▴ 20
0
votes
0
replies
589
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
15 months ago ali.oghabian • 0
1
vote
5
replies
855
views
Errors with makeTxDbFromBiomart
biomaRt
updated 16 months ago by 67k • written 16 months ago by ▴ 10
3
votes
2
replies
1.9k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 16 months ago by ★ 4.1k • written 16 months ago by ▴ 10
0
votes
3
replies
1.2k
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 16 months ago by 16k • written 16 months ago by • 0
1
vote
2
replies
962
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
16 months ago Miguel • 0
0
votes
1
reply
850
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 16 months ago by 67k • written 16 months ago by • 0
0
votes
1
reply
2.3k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 16 months ago by 43k • written 17 months ago by ▴ 30
0
votes
1
reply
1.2k
views
multiple filters in biomaRt
biomaRt
updated 18 months ago by ▴ 10 • written 18 months ago by • 0
2
votes
4
replies
1.4k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
18 months ago RuBBiT0 ▴ 10
1
vote
2
replies
1.2k
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 18 months ago by ★ 6.6k • written 18 months ago by • 0
0
votes
3
replies
807
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
0
votes
3
replies
2.1k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 20 months ago by ▴ 70
50 results • Page 1 of 1
Recent ...
Replies
Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Awards • All
Popular Question to Gordon Smyth 52k
Scholar to Aaron Lun ★ 28k
Teacher to Michael Love 43k
Popular Question to Dario Strbenac ★ 1.5k
Scholar to ATpoint ★ 4.6k
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