padjust after running DESEQ2
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Bine ▴ 20
@bine-23912
Last seen 7 weeks ago
UK

Dear all,

I got my results for my DESEQ2 analysis via results(dds0) which includes the padjusted value. Now after annotating my results I realised that some genes dont have a HGNC symbol and therefore I want to remove these genes. Therefore I will have less genes in total, which should influence my padj value. How can I re-run my results matrix? There is the function padjust?

Thank you all!

DESeq2 • 209 views
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@mikelove
Last seen 36 minutes ago
United States

If you want to remove genes you could just subset the dds before running results().

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Ah true, good point. I didnt think about that! Thank you :)

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