Question

Problems about installation

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Jiafy3999 • 0

@b335eb87

Last seen 3.0 years ago

China

> if (!require("BiocManager", quietly = TRUE))
+     install.packages("BiocManager")
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01)
> BiocManager::install(version = "3.14")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://mirrors.tongji.edu.cn/CRAN

Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01)
Installation paths not writeable, unable to update packages
  path: C:/Program Files/R/R-4.1.2/library
  packages:
    Matrix

hguqiagenv3.db • 7.1k views

ADD COMMENT • link updated 3.0 years ago by shepherl 4.1k • written 3.0 years ago by Jiafy3999 • 0

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Installation paths not writeable, unable to update packages means you do not have permissions to update that package in its default location. perhaps R was installed by an admin? You can create your own installation directory in a path you do have permissions by using the lib argument or setting an R_LIBS environment variable. The installation paths that R will try to use will be listed in order of the list produced by .libPaths() in R.

ADD REPLY • link 3.0 years ago shepherl 4.1k