DESeq2 expressed gene
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BioEpi • 0
@11b02720
Last seen 18 hours ago
United States

Hello Michael, I ran DESeq2 to get DEGs between case and control groups. I know that DESeq2 filters lowly expressed genes. So is it possible to get highly expresssed genes in each group? I do not want to set an arbitrary threshold, such as FPKM>1, to define higly expressed genes. I want to get the highly expressed genes from DESeq2 results. Thanks

DESeq2 • 127 views
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@mikelove
Last seen 23 hours ago
United States

We don't have a definition in DESeq2 of "highly expressed". Our filters are solely for practical purposes of detection, not for determining when a gene is expressed or not.

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thanks, Michael.

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