Hi Julie and Jianhong,
I just pulled trackviewer from BC today and noticed that gi2track is not available. Does this depend on R4.0?
Error in gi2track(gi) : could not find function "gi2track"
> sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] InteractionSet_1.14.0 SummarizedExperiment_1.16.1 DelayedArray_0.12.2
[4] BiocParallel_1.20.1 matrixStats_0.55.0 Biobase_2.46.0
[7] trackViewer_1.22.1 GenomicRanges_1.38.0 GenomeInfoDb_1.22.0
[10] IRanges_2.20.2 S4Vectors_0.24.3 BiocGenerics_0.32.0
loaded via a namespace (and not attached):
[1] ProtGenerics_1.18.0 bitops_1.0-6 bit64_0.9-7 RColorBrewer_1.1-2
[5] progress_1.2.2 httr_1.4.1 Rgraphviz_2.30.0 backports_1.1.5
[9] tools_3.6.2 R6_2.4.1 rpart_4.1-15 Hmisc_4.3-1
[13] DBI_1.1.0 Gviz_1.30.3 lazyeval_0.2.2 colorspace_1.4-1
[17] nnet_7.3-12 tidyselect_1.1.0 gridExtra_2.3 prettyunits_1.1.1
[21] bit_1.1-15.2 curl_4.3 compiler_3.6.2 graph_1.64.0
[25] htmlTable_1.13.3 grImport_0.9-5 rtracklayer_1.46.0 checkmate_2.0.0
[29] scales_1.1.0 askpass_1.1 rappdirs_0.3.1 stringr_1.4.0
[33] digest_0.6.24 Rsamtools_2.2.2 foreign_0.8-72 XVector_0.26.0
[37] dichromat_2.0-0 base64enc_0.1-3 jpeg_0.1-8.1 pkgconfig_2.0.3
[41] htmltools_0.4.0 plotrix_3.8-2 ensembldb_2.10.2 BSgenome_1.54.0
[45] dbplyr_1.4.4 htmlwidgets_1.5.1 rlang_0.4.8 rstudioapi_0.11
[49] RSQLite_2.2.0 generics_0.0.2 acepack_1.4.1 dplyr_1.0.2
[53] VariantAnnotation_1.32.0 RCurl_1.98-1.1 magrittr_1.5 GenomeInfoDbData_1.2.2
[57] Formula_1.2-3 Matrix_1.2-18 Rcpp_1.0.3 munsell_0.5.0
[61] lifecycle_0.2.0 stringi_1.4.6 zlibbioc_1.32.0 BiocFileCache_1.10.2
[65] blob_1.2.1 crayon_1.3.4 lattice_0.20-38 Biostrings_2.54.0
[69] splines_3.6.2 GenomicFeatures_1.38.2 hms_0.5.3 knitr_1.28
[73] pillar_1.4.3 biomaRt_2.42.0 XML_3.99-0.3 glue_1.4.2
[77] biovizBase_1.34.1 latticeExtra_0.6-29 data.table_1.12.8 BiocManager_1.30.10
[81] png_0.1-7 vctrs_0.3.4 gtable_0.3.0 openssl_1.4.1
[85] purrr_0.3.3 assertthat_0.2.1 ggplot2_3.2.1 xfun_0.21
[89] AnnotationFilter_1.10.0 survival_3.1-8 tibble_3.0.4 GenomicAlignments_1.22.1
[93] AnnotationDbi_1.48.0 memoise_1.1.0 cluster_2.1.0 ellipsis_0.3.0
In all likelihood your package version is too old. Consider updating R and Bioconductor and install the recent package version.