User: ATpoint

gravatar for ATpoint
ATpoint • 30
Reputation:
30
Status:
New User
Location:
Germany
Website:
https://www.biostars.o...
Last seen:
1 day, 14 hours ago
Joined:
2 years, 4 months ago
Email:
a*********@gmail.com

Wet-lab biologist by training, wannaba computational biologist.

Biostars Mod: ATpoint

Posts by ATpoint

<prev • 29 results • page 1 of 3 • next >
0
votes
0
answers
84
views
0
answers
Comment: C: How to adjust and align timepoints on x-axis in the ggplot2
... Cross-posted: https://www.biostars.org/p/409725/ ...
written 17 days ago by ATpoint • 30
0
votes
0
answers
66
views
0
answers
Rsamtools / rtracklayer creating csi index for BAM files
... I am asking this out of personal interest based on [this Biostars post][1] where OP aimed to export a BAM file with long chromosomes that do not fit into the default `bai` index, resulting in the error message one can see in that post. `export(anyBamfile.bam, BamFile(file = "exported.bam"))` After ...
rtracklayer rsamtools written 22 days ago by ATpoint • 30
1
vote
3
answers
126
views
3
answers
Answer: C: Paired t-test with DESeq2
... Others might give you a statistically-sound response but if you do not have access to the code or any details beyond doing `a t-test on your data` I would not use these results at all. Imagine a reviewer asks you at some point to clarify about the analysis strategy, what would you respond? Maybe you ...
written 9 weeks ago by ATpoint • 30
0
votes
0
answers
99
views
0
answers
Comment: C: How to find sites with H3K27me3 loss?
... Cross-posted: https://www.biostars.org/p/398094/ ...
written 3 months ago by ATpoint • 30
0
votes
1
answer
104
views
1
answers
Comment: C: Deseq2 post functional annotation for metagenome
... Cross-posted https://www.biostars.org/p/397969/ ...
written 3 months ago by ATpoint • 30
1
vote
0
answers
117
views
0
answers
Comment: C: Merging two files based on the identifier column (gene symbols)?
... Please do not cross-post. https://www.biostars.org/p/397989/ ...
written 3 months ago by ATpoint • 30
0
votes
1
answer
131
views
1
answers
Comment: C: DESeq2 unpaired RNAseq analysis
... Cross: https://www.biostars.org/p/397399/ ...
written 3 months ago by ATpoint • 30
2
votes
1
answer
98
views
1
answer
Correct use of TMM / normalization factors based on large bins
... The `csaw` package suggests to use TMM normalization based on large, e.g. 10kb, bins across the genome if ChIP-seq samples are expected to show rather global differences / composition bias is expected. As I want to use the resulting normalization factors to scale non-standard (=non `DGElist` files, ...
csaw tmm written 3 months ago by ATpoint • 30
0
votes
1
answer
119
views
1
answers
Comment: C: Problem in featureCounts file.
... Cross-posted: https://www.biostars.org/p/392402/ ...
written 4 months ago by ATpoint • 30
0
votes
1
answer
197
views
1
answers
Comment: C: Paired samples in cell lines using deseq2
... Your samples notably cluster by cell line, not by treatment. Therefore it appears unfortunate to use them as biological replicates. From a biological standpoint this quite normal for cell lines. During cell line establishment there are a lot of things changing inside the cell, particular clones star ...
written 5 months ago by ATpoint • 30

Latest awards to ATpoint

Autobiographer 13 months ago, has more than 80 characters in the information field of the user's profile.
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 143 users visited in the last hour