Hello,
I am trying to translate a DNA sequence in Biostrings. The problem I am running into is that my DNA sequence is from an amber codon suppresor strain of E.coli. Therefore, I would like to use a genetic code table that uses X as the amino acid for TAG/UAG. Is there a way to edit the standard genetic code table in Biostrings to change TAG from a stop codon to X?
Thank you, Sam
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James, Can you say more about this? Bioconductor packages are usually installed by bioc, so there is little out there on building your own package. Could you point to an explanation? Might not be the exactly correct question.
Sure. Here's how to do it. I am assuming you are on a Linux-like computer, or have RTools installed on Windows. Here I am being charitable and including MacOS as a Linux like computer, but you may need XCode or some other stuff that I don't care to know about if you are on that OS.