GenomeInfoDbData cannot install in R and warning had non-zero exit status
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Entering edit mode
yt_lei1998 • 0
@3f470ea9
Last seen 2.5 years ago
China

I tried twice,the first I installed in R:

BiocManager::install("GenomeInfoDbData")

trying URL 'https://mirrors.tuna.tsinghua.edu.cn/bioconductor//packages/3.14/data/annotation/src/contrib/GenomeInfoDbData_1.2.7.tar.gz'
Content type 'application/octet-stream' length 11193674 bytes (10.7 MB)
downloaded 10.7 MB

错误: 句法分析器15行里不能有多字节字符
停止执行

The downloaded source packages are in
    ‘C:\Users\86151\AppData\Local\Temp\RtmpqqxzhM\downloaded_packages’
Old packages: 'Rcpp'
Update all/some/none? [a/s/n]: 
n
Warning message:
In .inet_warning(msg) :
  installation of package ‘GenomeInfoDbData’ had non-zero exit status

The second,I downloaded it from website

install.packages("D:/Software/R/r_workplace/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz", repos = NULL, type = "source")
错误: 句法分析器15行里不能有多字节字符
停止执行
Warning in install.packages :
  installation of package ‘D:/Software/R/r_workplace/downloaded_packages/GenomeInfoDbData_1.2.7.tar.gz’ had non-zero exit status

What should I do to install ? Thanks for answer this question.

sessionInfo( )

R version 4.1.2 (2021-11-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22000)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936 
[2] LC_CTYPE=Chinese (Simplified)_China.936   
[3] LC_MONETARY=Chinese (Simplified)_China.936
[4] LC_NUMERIC=C                              
[5] LC_TIME=Chinese (Simplified)_China.936    

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] IRanges_2.28.0      S4Vectors_0.32.3    BiocGenerics_0.40.0
[4] installr_0.23.2    

loaded via a namespace (and not attached):
 [1] matrixStats_0.61.0   bitops_1.0-7         magrittr_2.0.2      
 [4] stringi_1.7.6        tools_4.1.2          stringr_1.4.0       
 [7] RCurl_1.98-1.6       MatrixGenerics_1.6.0 compiler_4.1.2      
[10] BiocManager_1.30.16
GenomeInfoDb • 1.5k views
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I solved this problem.I decompressed this package and recompress as .zip,then used R to install.It can use now.

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