flowDensity Unable to find inherited method when given a flowFrame Object
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nmchavez • 0
@083cd1b8
Last seen 2.3 years ago
United States

I am attempting to make some simple gates on single colored controls. I first read in all the .fcs files of interest using read.FCS

frames <- lapply(dir(fcs_path, full.names = TRUE), read.FCS, truncate_max_range = FALSE)

I know that the third frame in this list is the single colored control for CD3, so I pull that frame from the list:

CD3_frame <- frames[[3]]

This gives me a single flowFrame:

class(CD3_frame)
[1] "flowFrame"
attr(,"package")
[1] "flowCore"

Now when I attempt to use flowDensity in its most basic form, I get this error.

CD3_frame.gate <- flowDensity(CD3_frame, channels = c("FL4-A", "FSC-A"),
                              positions = c(T, NA))
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function ‘flowDensity’ for signature ‘"flowFrame", "character", "missing", "missing"’

I have successfully used flowDensity in the past using this same flow and have not run into this problem. Is there something obvious that I am missing here?

flowCore flowDensity • 776 views
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