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Showing :
flowCore
•
reset
2
votes
1
reply
121
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
10 weeks ago
aguirre.mimoun
▴ 20
0
votes
0
replies
105
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
11 weeks ago
Dennis.hinkel
• 0
2
votes
9
replies
431
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 4 months ago by
SamGG
▴ 290 • written 4 months ago by
alex
• 0
0
votes
0
replies
267
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore
FlowCytometryData
flowTrans
flow
9 months ago
hamiltond
▴ 10
0
votes
0
replies
376
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore
FlowCytometryData
10 months ago
hamiltond
▴ 10
0
votes
0
replies
257
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
10 months ago
nmchavez
• 0
0
votes
0
replies
226
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore
flowDensity
10 months ago
nmchavez
• 0
0
votes
0
replies
229
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
13 months ago
markkelly1983
▴ 20
2
votes
1
reply
426
views
Difference in output of logicle transform in different languages
flowCore
updated 10 months ago by
Eduardo
• 0 • written 13 months ago by
markkelly1983
▴ 20
0
votes
0
replies
334
views
Job:
Bioconductor developer
FlowCytometry
flowCore
13 months ago
markkelly1983
▴ 20
0
votes
1
reply
361
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS
flowCore
15 months ago
Rainer
• 0
0
votes
1
reply
438
views
Undefined columns error R cytometry analysis
flowCore
ggcyto
FlowCytometryData
updated 16 months ago by
Jiang, Mike
★ 1.3k • written 21 months ago by
Elizabeth
• 0
0
votes
1
reply
778
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 16 months ago by
Jiang, Mike
★ 1.3k • written 21 months ago by
Khai-Chuong
• 0
0
votes
1
reply
587
views
Re-naming $PnS parameters
flowCore
updated 22 months ago by
SamGG
▴ 290 • written 22 months ago by
jasonemo
• 0
2
votes
3
replies
549
views
Getting number of datasets with flowCore
flowCore
updated 22 months ago by
SamGG
▴ 290 • written 23 months ago by
mark.holmes
▴ 10
1
vote
1
reply
666
views
Error when using read.FCS
compensation
flowCore
FlowCore
read.FCS
updated 24 months ago by
SamGG
▴ 290 • written 24 months ago by
Pepijn
• 0
0
votes
0
replies
342
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
2.2 years ago
GFM
▴ 20
1
vote
6
replies
783
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 2.2 years ago by
SamGG
▴ 290 • written 2.2 years ago by
Rainer
• 0
0
votes
7
replies
915
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow
flowCore
updated 2.3 years ago by
Jiang, Mike
★ 1.3k • written 2.3 years ago by
anders.tondell
▴ 30
3
votes
10
replies
1.3k
views
Reading multiple data segments from FCS 3.0 file
flowCore
flow cytometry
FCS 3.0
ncdfFlowSet
updated 8 months ago by
SamGG
▴ 290 • written 2.7 years ago by
alavy
▴ 30
0
votes
1
reply
352
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 2.7 years ago by
Jake Wagner
▴ 310 • written 2.8 years ago by
noviello
• 0
2
votes
2
replies
798
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow
flowCore
ncdfFlowSet
read.FCS
updated 2.7 years ago by
Jake Wagner
▴ 310 • written 2.7 years ago by
alavy
▴ 30
4
votes
5
replies
601
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 2.8 years ago by
Jake Wagner
▴ 310 • written 2.8 years ago by
stefankolling+github
• 0
0
votes
0
replies
274
views
Strange problem with parameter range when creating a flowFPModel
flowCore
flowFP
flowFPModel
2.9 years ago
palffy.karoly
• 0
0
votes
2
replies
402
views
flowCore not displaying FL gates
flowCore
updated 3.0 years ago by
Jiang, Mike
★ 1.3k • written 3.0 years ago by
rleenay
• 0
2
votes
4
replies
618
views
Mathematical operations in FCS file
flowCore
flow cytometry
3.1 years ago
chandra.swarnendu
• 0
0
votes
1
reply
956
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 3.2 years ago by
Jiang, Mike
★ 1.3k • written 3.2 years ago by
gene_bioconductor
▴ 10
1
vote
3
replies
738
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
3.4 years ago
cahyasu88
• 0
1
vote
0
replies
495
views
Cell cycle analysis subG1
flowploidy
apoptosis
cell cycle
flowCore
3.5 years ago
nina.hahn
• 0
3
votes
2
replies
601
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
3.5 years ago
Brent.OCarrigan
• 0
1
vote
2
replies
970
views
flowCore issue: creating and applying new compensation matrix
compensate()
flowCore
3.5 years ago
rdlr
• 0
0
votes
1
reply
454
views
Issue creating transformed filter in flowCore
flowCore
updated 3.6 years ago by
Jake Wagner
▴ 310 • written 3.6 years ago by
npb27
• 0
4
votes
4
replies
823
views
FCSTransTransform() implementation in flowCore
flowCore
FCSTrans
flow cytometry
updated 3.6 years ago by
Jake Wagner
▴ 310 • written 3.6 years ago by
Nik Tuzov
▴ 80
3
votes
1
reply
1.3k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 3.6 years ago by
Jake Wagner
▴ 310 • written 3.6 years ago by
apurva
• 0
2
votes
3
replies
999
views
how to use the flowCore spillover function
flowCore
spillover
gatingset2FlowJO
updated 3.6 years ago by
Jake Wagner
▴ 310 • written 3.6 years ago by
k.teijgeler
• 0
1
vote
4
replies
846
views
flowCore install missing a dependency?
flowCore
Installation
dependency
updated 3.7 years ago by
Jake Wagner
▴ 310 • written 3.7 years ago by
Robert Baer
▴ 70
0
votes
0
replies
438
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy
flowcore
flow cytometry
3.8 years ago
kovacik
• 0
1
vote
5
replies
1.0k
views
Flow cytometry optimization of transformation parameters
flow Cytometry
flowCore
flowTrans
3.9 years ago
carlos.x.martinez-fleites
• 0
1
vote
2
replies
606
views
gatingML examples needed
flowCore
flowUtils
gatingML
updated 3.9 years ago by
Jiang, Mike
★ 1.3k • written 3.9 years ago by
Andrew Box
▴ 10
1
vote
6
replies
1.5k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 3.9 years ago by
SamGG
▴ 290 • written 3.9 years ago by
OT
• 0
2
votes
5
replies
796
views
flowCore filterSummary toTable() function not working
flowCore
flowcore
flow cytometry
updated 3.9 years ago by
Jake Wagner
▴ 310 • written 3.9 years ago by
mahlon
• 0
0
votes
1
reply
602
views
Error after assignPrelim(), CyTOF compenstation
CATALYST
flowCore
assignPrelim
Error in vapply
read.FCS
4.0 years ago
j.krop
• 0
1
vote
1
reply
934
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore
read.FCS
memory_limit
4.0 years ago
lloyd.izard
▴ 80
0
votes
1
reply
755
views
flowDensity loop on flowSet
flowdensity
flowcore
for loop
updated 4.0 years ago by
Bioconductor Community
0 • written 4.2 years ago by
beshea.jj
• 0
0
votes
2
replies
692
views
flowCore: retain raw data in the flowset after transformation
flow cytometry
flowcore
updated 4.0 years ago by
Jiang, Mike
★ 1.3k • written 4.0 years ago by
carlos.x.martinez-fleites
• 0
3
votes
3
replies
1.2k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto
flowcore
flow cytometry
updated 4.4 years ago by
Jiang, Mike
★ 1.3k • written 5.3 years ago by
Andrew Box
▴ 10
1
vote
2
replies
682
views
Newbie question: how do I address a subset obtained by split()?
flowStats
newbie
split
subset
flowCore
4.4 years ago
yulia.chupalova
• 0
3
votes
3
replies
2.5k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS
flowframe
flowcore
flow cytometry
4.4 years ago
vonskopnik
▴ 10
1
vote
6
replies
865
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz
flowCore
package installation
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
ghn876
▴ 10
0
votes
1
reply
658
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore
flow cytometry
flowdensity
hyperlog
transformation
updated 4.4 years ago by
Jiang, Mike
★ 1.3k • written 4.4 years ago by
Joseph.Hanson
• 0
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
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How can I draw a barplot of complexheatmap according 'Tumor Type'
on which data type limma::removeBatchEffect can be applyed?
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
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