Showing : flowCore • reset
0
votes
1
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216
views
Gatins Set error
flowCore Bioconductor
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
1
reply
610
views
FCS 32 support going backwards?
flowCore
updated 8 months ago by • 0 • written 8 months ago by • 0
0
votes
0
replies
469
views
Trouble with double delimiters in .fcs file (flowCore package)
flowCore FlowCytometry FlowCytometryData
13 months ago vpochic • 0
0
votes
0
replies
950
views
How to fix fix $PnR in flowCore
flowCore
updated 20 months ago by 68k • written 20 months ago by • 0
1
vote
1
reply
1.1k
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 23 months ago by ▴ 360 • written 24 months ago by ▴ 30
0
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0
replies
884
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
2.1 years ago info ▴ 10
0
votes
6
replies
2.3k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 2.2 years ago by ▴ 360 • written 2.2 years ago by • 0
1
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1
reply
930
views
How to read fcs3.2 files
flowCore
updated 2.2 years ago by 68k • written 2.2 years ago by ▴ 10
0
votes
2
replies
979
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
2.3 years ago mrescan • 0
0
votes
0
replies
873
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
2.6 years ago aguirre ▴ 20
0
votes
2
replies
1.0k
views
Unable to access Git links.
Source flowCore Repository git
updated 2.8 years ago by 4.3k • written 2.8 years ago by • 0
0
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0
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851
views
Merging 2 staining panels
FlowCytometry flowCore
3.0 years ago michaela.gregorova13 • 0
0
votes
0
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1.3k
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
3.0 years ago pawel.malecki • 0
2
votes
1
reply
1.9k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
3.2 years ago aguirre ▴ 20
0
votes
0
replies
1.0k
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
3.3 years ago Dennis.hinkel • 0
2
votes
9
replies
3.0k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 3.4 years ago by ▴ 360 • written 3.4 years ago by • 0
0
votes
0
replies
1.4k
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
3.9 years ago hamiltond ▴ 10
0
votes
0
replies
1.7k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
3.9 years ago hamiltond ▴ 10
0
votes
0
replies
1.2k
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
3.9 years ago nmchavez • 0
0
votes
0
replies
1.2k
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
3.9 years ago nmchavez • 0
0
votes
0
replies
1.1k
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
4.1 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.4k
views
Difference in output of logicle transform in different languages
flowCore
updated 3.9 years ago by • 0 • written 4.2 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Job: Bioconductor developer
FlowCytometry flowCore
4.2 years ago markkelly1983 ▴ 20
0
votes
1
reply
1.1k
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
4.3 years ago Rainer • 0
0
votes
1
reply
1.4k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 4.4 years ago by ★ 1.3k • written 4.8 years ago by • 0
0
votes
1
reply
2.5k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 4.4 years ago by ★ 1.3k • written 4.8 years ago by • 0
0
votes
1
reply
1.9k
views
Re-naming $PnS parameters
flowCore
updated 4.9 years ago by ▴ 360 • written 4.9 years ago by • 0
2
votes
3
replies
1.7k
views
Getting number of datasets with flowCore
flowCore
updated 4.9 years ago by ▴ 360 • written 4.9 years ago by ▴ 10
1
vote
1
reply
2.4k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 5.0 years ago by ▴ 360 • written 5.0 years ago by • 0
0
votes
0
replies
1.2k
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
5.2 years ago GFM ▴ 20
1
vote
6
replies
2.1k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 5.3 years ago by ▴ 360 • written 5.3 years ago by • 0
0
votes
8
replies
2.9k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 2.4 years ago by • 0 • written 5.3 years ago by ▴ 30
3
votes
10
replies
3.9k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 3.7 years ago by ▴ 360 • written 5.8 years ago by ▴ 30
0
votes
1
reply
1.3k
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.8 years ago by ▴ 310 • written 5.9 years ago by • 0
2
votes
2
replies
2.4k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by ▴ 30
4
votes
5
replies
2.0k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.9 years ago by ▴ 310 • written 5.9 years ago by • 0
0
votes
0
replies
1.1k
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
6.0 years ago palffy.karoly • 0
0
votes
2
replies
1.5k
views
flowCore not displaying FL gates
flowCore
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
2
votes
4
replies
1.9k
views
Mathematical operations in FCS file
flowCore flow cytometry
6.2 years ago chandra.swarnendu • 0
0
votes
1
reply
2.8k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by ▴ 10
1
vote
3
replies
1.9k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
6.4 years ago cahyasu88 • 0
1
vote
0
replies
1.4k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
6.5 years ago nina.hahn • 0
3
votes
2
replies
1.6k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
6.5 years ago Brent.OCarrigan • 0
1
vote
2
replies
3.0k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
6.6 years ago rdlr • 0
0
votes
1
reply
1.2k
views
Issue creating transformed filter in flowCore
flowCore
updated 6.6 years ago by ▴ 310 • written 6.6 years ago by • 0
4
votes
4
replies
2.1k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 6.7 years ago by ▴ 310 • written 6.7 years ago by ▴ 90
3
votes
1
reply
2.8k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 6.7 years ago by ▴ 310 • written 6.7 years ago by • 0
2
votes
3
replies
2.8k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 6.7 years ago by ▴ 310 • written 6.7 years ago by • 0
1
vote
4
replies
2.6k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 6.7 years ago by ▴ 310 • written 6.7 years ago by ▴ 70
0
votes
0
replies
1.2k
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
6.9 years ago kovacik • 0
211 results • Page 1 of 5
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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
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FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
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Answer: Subsetting data verses contrasts [DESeq2]?
A: WGCNA differences two groups 10 replicates each group
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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
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