Showing : flowCore • reset
0
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47
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Reducing/sampling number of FCS events
FlowCytometry flowCore
25 days ago markkelly1983 • 0
0
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0
replies
102
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Difference in output of logicle transform in different languages
flowCore
7 weeks ago markkelly1983 • 0
0
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0
replies
81
views
Job: Bioconductor developer
FlowCytometry flowCore
7 weeks ago markkelly1983 • 0
0
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1
reply
129
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Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
12 weeks ago Rainer • 0
0
votes
1
reply
223
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 4 months ago by ★ 1.3k • written 9 months ago by • 0
0
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1
reply
297
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 4 months ago by ★ 1.3k • written 8 months ago by • 0
0
votes
1
reply
247
views
Re-naming $PnS parameters
flowCore
updated 10 months ago by ▴ 270 • written 10 months ago by • 0
2
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3
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320
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Getting number of datasets with flowCore
flowCore
updated 10 months ago by ▴ 270 • written 10 months ago by ▴ 10
1
vote
1
reply
259
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 11 months ago by ▴ 270 • written 11 months ago by • 0
0
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0
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174
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
14 months ago GFM ▴ 20
1
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6
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478
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 14 months ago by ▴ 270 • written 14 months ago by • 0
0
votes
7
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624
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flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 15 months ago by ★ 1.3k • written 15 months ago by ▴ 30
3
votes
8
replies
709
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 11 weeks ago by • 0 • written 20 months ago by ▴ 10
0
votes
1
reply
207
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 20 months ago by ▴ 280 • written 22 months ago by • 0
2
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2
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414
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 21 months ago by ▴ 280 • written 21 months ago by ▴ 10
4
votes
5
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392
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 21 months ago by ▴ 280 • written 21 months ago by • 0
0
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0
replies
150
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
23 months ago palffy.karoly • 0
0
votes
2
replies
237
views
flowCore not displaying FL gates
flowCore
updated 2.0 years ago by ★ 1.3k • written 2.0 years ago by • 0
2
votes
4
replies
371
views
Mathematical operations in FCS file
flowCore flow cytometry
2.1 years ago chandra.swarnendu • 0
0
votes
1
reply
550
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by ▴ 10
1
vote
3
replies
483
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
2.4 years ago cahyasu88 • 0
1
vote
0
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343
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
2.5 years ago nina.hahn • 0
3
votes
2
replies
382
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
2.5 years ago Brent.OCarrigan • 0
1
vote
2
replies
549
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
2.5 years ago rdlr • 0
0
votes
1
reply
309
views
Issue creating transformed filter in flowCore
flowCore
updated 2.6 years ago by ▴ 280 • written 2.6 years ago by • 0
4
votes
4
replies
567
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 2.6 years ago by ▴ 280 • written 2.6 years ago by ▴ 70
2
votes
1
reply
770
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 2.6 years ago by ▴ 280 • written 2.6 years ago by • 0
2
votes
3
replies
642
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 2.6 years ago by ▴ 280 • written 2.6 years ago by • 0
1
vote
4
replies
585
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 2.7 years ago by ▴ 280 • written 2.7 years ago by ▴ 70
0
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0
replies
288
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
2.8 years ago kovacik • 0
1
vote
5
replies
653
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
2.9 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
438
views
gatingML examples needed
flowCore flowUtils gatingML
updated 2.9 years ago by ★ 1.3k • written 2.9 years ago by ▴ 10
1
vote
6
replies
1.1k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 2.9 years ago by ▴ 270 • written 2.9 years ago by • 0
2
votes
5
replies
603
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 2.9 years ago by ▴ 280 • written 2.9 years ago by • 0
0
votes
1
reply
453
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
3.0 years ago j.krop • 0
1
vote
1
reply
729
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
3.0 years ago lloyd.izard ▴ 80
0
votes
1
reply
558
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 3.0 years ago by 0 • written 3.2 years ago by • 0
0
votes
2
replies
513
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 3.0 years ago by ★ 1.3k • written 3.0 years ago by • 0
3
votes
3
replies
965
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 3.4 years ago by ★ 1.3k • written 4.3 years ago by ▴ 10
1
vote
2
replies
517
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
3.4 years ago yulia.chupalova • 0
3
votes
3
replies
2.0k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
3.4 years ago vonskopnik ▴ 10
1
vote
6
replies
675
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 3.4 years ago by 25k • written 3.4 years ago by ▴ 10
0
votes
1
reply
445
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by • 0
0
votes
2
replies
468
views
Loading Flow Files
flowcore list.files
3.5 years ago nicolette.sipperly • 0
0
votes
1
reply
385
views
flowCore parameters( ) function does not appear to exist
flowcore
3.5 years ago neilruthen • 0
1
vote
3
replies
2.8k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
3.6 years ago Bayram Sarilmaz • 0
0
votes
2
replies
794
views
Beginner & HowTo-flowCore-Example
flowcore
updated 3.7 years ago by 58k • written 3.7 years ago by • 0
2
votes
5
replies
953
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
3.7 years ago vinko.tosevski • 0
2
votes
4
replies
713
views
trouble showing a polygon gate using geom_gate
flowcore ggcyto
updated 3.8 years ago by ★ 1.3k • written 3.8 years ago by ▴ 10
0
votes
3
replies
912
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
3.9 years ago Samuel Ahuno • 0
50 results • Page 1 of 1
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Comment: Differential Splicing using edgeR by Assa Yeroslaviz ★ 1.5k
Sorry for not being clear enough. Your remark is exactly my question. When I do the quantification on the exon-level, the primary IDs are…
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa by Michael Love 35k
This is not the DESeq2 syntax, see vignette or functions man pages.
Comment: graphite package SSL certificate by x • 0
Thank you so much!
Answer: Where can I find EnsDb.Hsapiens.v105? by jon.klonowski ▴ 20
To ensure access to the most up to date EnsDb databases: 1. Make sure your Bioconductor is the most up to date by running `BiocManager::in…
Comment: LOC gene IDs for characterised genes in annotation files by James W. MacDonald 58k
The most updated gene names should come from that GTF file. ``` > library(rtracklayer) > library(GenomicFeatures) > z <- import("https://f…
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Comment: Differential Splicing using edgeR
Answer: Why is "SimpleList" not inheriting "list" ?
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Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ?
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