Showing : flowCore • reset
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48
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how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
12 days ago Khai-Chuong • 0
0
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0
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39
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Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
20 days ago Elizabeth • 0
0
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1
reply
77
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Re-naming $PnS parameters
flowCore
updated 8 weeks ago by ▴ 270 • written 9 weeks ago by • 0
1
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3
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131
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Getting number of datasets with flowCore
flowCore
updated 10 weeks ago by ▴ 270 • written 10 weeks ago by • 0
1
vote
1
reply
94
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3 months ago by ▴ 270 • written 3 months ago by • 0
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0
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64
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flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
5 months ago GFM ▴ 20
1
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6
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219
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 6 months ago by ▴ 270 • written 6 months ago by • 0
0
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7
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380
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flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 6 months ago by ★ 1.3k • written 7 months ago by ▴ 30
3
votes
7
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266
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 12 months ago by ▴ 280 • written 12 months ago by ▴ 10
0
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1
reply
99
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FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 12 months ago by ▴ 280 • written 13 months ago by • 0
2
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2
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195
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Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 12 months ago by ▴ 280 • written 12 months ago by ▴ 10
4
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5
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203
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 13 months ago by ▴ 280 • written 13 months ago by • 0
0
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0
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71
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
14 months ago palffy.karoly • 0
0
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2
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102
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flowCore not displaying FL gates
flowCore
updated 16 months ago by ★ 1.3k • written 16 months ago by • 0
2
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4
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199
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Mathematical operations in FCS file
flowCore flow cytometry
17 months ago chandra.swarnendu • 0
0
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1
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228
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Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 10
1
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3
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190
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
20 months ago cahyasu88 • 0
1
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0
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238
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Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
21 months ago nina.hahn • 0
3
votes
2
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231
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
21 months ago Brent.OCarrigan • 0
1
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2
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295
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
22 months ago rdlr • 0
0
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1
reply
192
views
Issue creating transformed filter in flowCore
flowCore
updated 22 months ago by ▴ 280 • written 22 months ago by • 0
4
votes
4
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339
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 23 months ago by ▴ 280 • written 23 months ago by ▴ 70
2
votes
1
reply
483
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 23 months ago by ▴ 280 • written 23 months ago by • 0
2
votes
3
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360
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 23 months ago by ▴ 280 • written 23 months ago by • 0
1
vote
4
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341
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 24 months ago by ▴ 280 • written 24 months ago by ▴ 70
0
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0
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174
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
2.1 years ago kovacik • 0
1
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5
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427
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Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
2.2 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
293
views
gatingML examples needed
flowCore flowUtils gatingML
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by ▴ 10
1
vote
6
replies
779
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 2.2 years ago by ▴ 270 • written 2.2 years ago by • 0
2
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5
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384
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 2.2 years ago by ▴ 280 • written 2.2 years ago by • 0
0
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1
reply
328
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
2.3 years ago j.krop • 0
1
vote
1
reply
525
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
2.3 years ago lloyd.izard ▴ 80
0
votes
1
reply
412
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 2.3 years ago by 0 • written 2.5 years ago by • 0
0
votes
2
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379
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flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 2.4 years ago by ★ 1.3k • written 2.4 years ago by • 0
3
votes
3
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721
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 2.7 years ago by ★ 1.3k • written 3.6 years ago by ▴ 10
1
vote
2
replies
378
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
2.7 years ago yulia.chupalova • 0
3
votes
3
replies
1.5k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
2.7 years ago vonskopnik ▴ 10
1
vote
6
replies
516
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 10
0
votes
1
reply
329
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by • 0
0
votes
2
replies
335
views
Loading Flow Files
flowcore list.files
2.8 years ago nicolette.sipperly • 0
0
votes
1
reply
265
views
flowCore parameters( ) function does not appear to exist
flowcore
2.8 years ago neilruthen • 0
1
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3
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2.3k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
2.9 years ago Bayram Sarilmaz • 0
0
votes
2
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596
views
Beginner & HowTo-flowCore-Example
flowcore
updated 3.0 years ago by 56k • written 3.0 years ago by • 0
2
votes
5
replies
676
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
3.0 years ago vinko.tosevski • 0
2
votes
4
replies
531
views
trouble showing a polygon gate using geom_gate
flowcore ggcyto
updated 3.1 years ago by ★ 1.3k • written 3.1 years ago by ▴ 10
0
votes
3
replies
678
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
3.2 years ago Samuel Ahuno • 0
2
votes
4
replies
1.2k
views
Exporting FCS from FlowJo for flowCore & cytofkit analysis
flowcore flow cytometry cytofkit
updated 3.2 years ago by ▴ 270 • written 3.2 years ago by ▴ 10
1
vote
2
replies
433
views
How do you re-order .fcs files in a flowSet?
flowcore flowset bioconductor flow cytometry fcs file
3.2 years ago Samuel Ahuno • 0
0
votes
6
replies
1.2k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 3.3 years ago by • 0 • written 5.2 years ago by • 0
0
votes
1
reply
453
views
spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
3.3 years ago Samuel Ahuno • 0
50 results • Page 1 of 1
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Comment: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM by ben.vanderveer • 0
Thanks, it works! I did call the object in my script different, but for clarity here I changed it. best, Ben
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
Yea, no issue there... ``` FirstFile <- read.table(file.path(ExonCountFiles, sampleFiles)[1]) head(FirstFile) V1 V2 1 EN…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by Michael Love 33k
Another issue is whether R is allowed to read those files I guess. Try reading one in with `read.table` or `scan(..., what="char")`
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
Sorry the `directory` variable in my code was `ExonCountFiles` A vector of `TRUE` :) Which means to me that the function is looking for…
Answer: DESeq2 Multi-factor design not full rank by Michael Love 33k
> How can I create a custom model matrix that requires colData information from a dds object that in turn hasn’t been generated due to the …
Votes
Answer: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM
Answer: phenotypic table for DESeqDataSetFromHTSeqCount
Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa
Answer: Error: C stack usage of HDF5Array
Answer: "dim<-" against on-disk arrays
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