Showing : flowCore • reset
2
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1
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121
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
10 weeks ago aguirre.mimoun ▴ 20
0
votes
0
replies
105
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
11 weeks ago Dennis.hinkel • 0
2
votes
9
replies
431
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 4 months ago by ▴ 290 • written 4 months ago by • 0
0
votes
0
replies
267
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
9 months ago hamiltond ▴ 10
0
votes
0
replies
376
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
10 months ago hamiltond ▴ 10
0
votes
0
replies
257
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
10 months ago nmchavez • 0
0
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0
replies
226
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
10 months ago nmchavez • 0
0
votes
0
replies
229
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
13 months ago markkelly1983 ▴ 20
2
votes
1
reply
426
views
Difference in output of logicle transform in different languages
flowCore
updated 10 months ago by • 0 • written 13 months ago by ▴ 20
0
votes
0
replies
334
views
Job: Bioconductor developer
FlowCytometry flowCore
13 months ago markkelly1983 ▴ 20
0
votes
1
reply
361
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
15 months ago Rainer • 0
0
votes
1
reply
438
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 16 months ago by ★ 1.3k • written 21 months ago by • 0
0
votes
1
reply
778
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 16 months ago by ★ 1.3k • written 21 months ago by • 0
0
votes
1
reply
587
views
Re-naming $PnS parameters
flowCore
updated 22 months ago by ▴ 290 • written 22 months ago by • 0
2
votes
3
replies
549
views
Getting number of datasets with flowCore
flowCore
updated 22 months ago by ▴ 290 • written 23 months ago by ▴ 10
1
vote
1
reply
666
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 24 months ago by ▴ 290 • written 24 months ago by • 0
0
votes
0
replies
342
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
2.2 years ago GFM ▴ 20
1
vote
6
replies
783
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 2.2 years ago by ▴ 290 • written 2.2 years ago by • 0
0
votes
7
replies
915
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 2.3 years ago by ★ 1.3k • written 2.3 years ago by ▴ 30
3
votes
10
replies
1.3k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 8 months ago by ▴ 290 • written 2.7 years ago by ▴ 30
0
votes
1
reply
352
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 2.7 years ago by ▴ 310 • written 2.8 years ago by • 0
2
votes
2
replies
798
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 2.7 years ago by ▴ 310 • written 2.7 years ago by ▴ 30
4
votes
5
replies
601
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 2.8 years ago by ▴ 310 • written 2.8 years ago by • 0
0
votes
0
replies
274
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
2.9 years ago palffy.karoly • 0
0
votes
2
replies
402
views
flowCore not displaying FL gates
flowCore
updated 3.0 years ago by ★ 1.3k • written 3.0 years ago by • 0
2
votes
4
replies
618
views
Mathematical operations in FCS file
flowCore flow cytometry
3.1 years ago chandra.swarnendu • 0
0
votes
1
reply
956
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 3.2 years ago by ★ 1.3k • written 3.2 years ago by ▴ 10
1
vote
3
replies
738
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
3.4 years ago cahyasu88 • 0
1
vote
0
replies
495
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
3.5 years ago nina.hahn • 0
3
votes
2
replies
601
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
3.5 years ago Brent.OCarrigan • 0
1
vote
2
replies
970
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
3.5 years ago rdlr • 0
0
votes
1
reply
454
views
Issue creating transformed filter in flowCore
flowCore
updated 3.6 years ago by ▴ 310 • written 3.6 years ago by • 0
4
votes
4
replies
823
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 3.6 years ago by ▴ 310 • written 3.6 years ago by ▴ 80
3
votes
1
reply
1.3k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 3.6 years ago by ▴ 310 • written 3.6 years ago by • 0
2
votes
3
replies
999
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 3.6 years ago by ▴ 310 • written 3.6 years ago by • 0
1
vote
4
replies
846
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 3.7 years ago by ▴ 310 • written 3.7 years ago by ▴ 70
0
votes
0
replies
438
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
3.8 years ago kovacik • 0
1
vote
5
replies
1.0k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
3.9 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
606
views
gatingML examples needed
flowCore flowUtils gatingML
updated 3.9 years ago by ★ 1.3k • written 3.9 years ago by ▴ 10
1
vote
6
replies
1.5k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 3.9 years ago by ▴ 290 • written 3.9 years ago by • 0
2
votes
5
replies
796
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 3.9 years ago by ▴ 310 • written 3.9 years ago by • 0
0
votes
1
reply
602
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
4.0 years ago j.krop • 0
1
vote
1
reply
934
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
4.0 years ago lloyd.izard ▴ 80
0
votes
1
reply
755
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 4.0 years ago by 0 • written 4.2 years ago by • 0
0
votes
2
replies
692
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 4.0 years ago by ★ 1.3k • written 4.0 years ago by • 0
3
votes
3
replies
1.2k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 4.4 years ago by ★ 1.3k • written 5.3 years ago by ▴ 10
1
vote
2
replies
682
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
4.4 years ago yulia.chupalova • 0
3
votes
3
replies
2.5k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
4.4 years ago vonskopnik ▴ 10
1
vote
6
replies
865
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 4.4 years ago by 25k • written 4.4 years ago by ▴ 10
0
votes
1
reply
658
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 4.4 years ago by ★ 1.3k • written 4.4 years ago by • 0
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
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on which data type limma::removeBatchEffect can be applyed?
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
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