WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
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Amazing570 • 0
@1841e218
Last seen 13 months ago
United States

Hi, I am doing a WGCNA analysis with my normalized gene expression data set. In the Cytoscape visualization step, I got the following error . My laptop RAM is 16 GB, so I tried to redo the analysis using a supercomputer but got the same error. Could you suggest how may I go forward? TIA.

**### Exporting Files for Cytoscape Visualization ###

Recalculate topological overlap if needed`

TOM = TOMsimilarityFromExpr(datexp, power = 5) Error: cannot allocate vector of size 18.4 Gb`r**

include your problematic code here with any corresponding output

please also include the results of running the following in an R session

sessionInfo( ) R version 4.1.2 (2021-11-01) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22000) ```

analsyis WGCNA • 572 views
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