Genomic and Proteomic Analysis in the diagnosis of Oral Submucous Fibrosis
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Prerna • 0
@c660b977
Last seen 2.6 years ago
India

I am trying to add labels to my volcano plot however, the labels do not appear on the VP, code used is mentioned below if you please help me with the problem

colnames(fit2) 
ct <- 1        
volcanoplot(fit2, coef=ct, main=colnames(fit2)[ct], pch=20,
            highlight=length(which(dT[,ct]!=0)), names=rep('+', nrow(fit2)))
library(dplyr)
ggplot(fit2) + 
  geom_point(aes(log2FC,logpv,col= diffexpressed)) +
  geom_text_repel(data = fit2 %>% 
                    filter(Genes %in% c("klf6", "podxl", "gng7", "tusc3", "bag4", "gcnt2", "scp2", "podxl2", "nrxn1", "tnfrsf8", "cd14, gyg1,))"alox5ap", "plat", "tpp1", "oasl", "spock1", "ivd", "tinagli", "acaa2")), 
                  aes(label = Genes, x = log2FC, y = P.Value), box.padding = unit(.7, "lines"),hjust= 0.30) +
  scale_color_manual(values=c("red", "blue"))
```
geneLenDataBase • 597 views
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