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Hello everybody! I am trying to install DESeq2 and I keep getting errors. At first I had about 10 errors regarding packages I couldnt install. The main problem of that was that I couldnt install RCurl. From searching I managed to install RCurl but I still get the bellow error.
> install('DESeq2', lib = '/home/kostas/R/x86_64-pc-linux-gnu-library/3.6')
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://cloud.r-project.org
Bioconductor version 3.10 (BiocManager 1.30.17), R 3.6.3 (2020-02-29)
Installing package(s) 'DESeq2'
Warning: dependency ‘locfit’ is not available
trying URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/DESeq2_1.26.0.tar.gz'
Content type 'application/x-gzip' length 2060061 bytes (2.0 MB)
==================================================
downloaded 2.0 MB
ERROR: dependency ‘locfit’ is not available for package ‘DESeq2’
* removing ‘/home/kostas/R/x86_64-pc-linux-gnu-library/3.6/DESeq2’
The downloaded source packages are in
‘/tmp/RtmpvImMFF/downloaded_packages’
Warning message:
In install.packages(...) :
installation of package ‘DESeq2’ had non-zero exit status
