Rbowtie2 problem
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Francisco ▴ 10
@dd2ab2db
Last seen 23 months ago
Spain

It should be nice to understand why always obtain NULL when using Rbowtie2 functions. The program its located in the library but it doesn´t work

library(Rbowtie2)
> td <- tempdir()
> refs <- dir(system.file(package="Rbowtie2", "extdata", "bt2","refs"),full=TRUE)
> (cmdout<-bowtie2_build(references=refs, 
+                        bt2Index=file.path(td, "lambda_virus"), "--threads 4 --quiet",
+                        overwrite=TRUE))
NULL
Rbowtie2 • 483 views
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