Timeout error when querying DGIDB
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Entering edit mode
Jannah • 0
@00e6cda0
Last seen 7 weeks ago
Australia

Hi,

Im getting timeout error when trying to query about 500 genes using rDGIdb https://www.bioconductor.org/packages/release/bioc/html/rDGIdb.html

 resultFilter <- queryDGIdb(genes_drug,
                            sourceDatabases = NULL,
                            geneCategories = NULL,
                            interactionTypes = NULL)

Error:

Querying DGIDB...Error in curl::curl_fetch_memory(url, handle =
handle) :    Timeout was reached: [dgidb.org] Connection timeout after
10002 ms
sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.4



package.version("rDGIdb")
[1] "1.22.0"
rDGIdb • 70 views
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