Error message: Could not find function "DESeqDataSetFromMatrix"
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@5e002df5
Last seen 17 days ago
Japan

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Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )

Error in DESeqDataSetFromMatrix(countData = countdata, colData = coldata, : could not find function "DESeqDataSetFromMatrix"

DESeq2 • 197 views
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@james-w-macdonald-5106
Last seen 4 hours ago
United States

Any time you see an error that ends with

could not find function "<function name goes here>"

it means that you haven't loaded the package that contains that function yet. So start with library(DESeq2) and it will then work.

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After run the library(DESeq2). Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘locfit’

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Install locfit.

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when install.packages("locfit")

Warning in install.packages : package ‘locfit’ is not available (for R version 3.6.3)

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