Hi all,

After loading Ensembl human genes dataset and listing ‘phenotype_source”:

library(biomaRt)
ensembl <- useEnsembl(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")
listFilterOptions(mart = ensembl, filter = "phenotype_source")

It shows three sources:

[1] "DDG2P"      "MIM morbid" "Orphanet"

Ensembl website is also using “Cancer Gene Census” as a source (example: https://useast.ensembl.org/Homo_sapiens/Gene/Phenotype?db=core;g=ENSG00000141510;r=17:7661779-7687538)

Is it possible to add “Cancer Gene Census” to “phenotype_source” in biomaRt? )

Thank you,

Hector