DESeq2 with incorrect adjusted Pvalues
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Alexander • 0
@ef8e6160
Last seen 19 days ago
Germany

When using DESeq2 v1.26.0 I found a strange behaviour. The adjusted Pvalues are not BH values. Strange NA values are occuring where the non-adjusted Pvalue has normal values.

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Is this known? Is there a solution?

DESeq2 • 128 views
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swbarnes2 ★ 1.1k
@swbarnes2-14086
Last seen 8 hours ago
San Diego

The NAs are likely to be genes with super low counts; you probably don't want them anyway.

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Yes, there is a section of the vignette that explains the NA.

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