Error when run scCATCH
1
0
Entering edit mode
Chris • 0
@3fdb6f97
Last seen 5 days ago
United States

Hi all,

Would you please tell me how to fix the error below? Thank you so much!

Update: I fixed the error. Thank you.

my_obj <- findmarkergene(object = my_obj, species = "Human", marker = cellmatch, tissue = "Blood")

There are 1255 potential marker genes in CellMatch database for Human on Blood.
Error in $<-.data.frame(*tmp*, "cluster", value = character(0)) : replacement has 0 rows, data has 979 

sessionInfo( )

R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.1

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] BiocManager_1.30.18 compiler_4.2.1      fastmap_1.1.0       cli_3.4.0           htmltools_0.5.3    
 [6] tools_4.2.1         rstudioapi_0.14     yaml_2.3.5          rmarkdown_2.16      knitr_1.40         
[11] xfun_0.32           digest_0.6.29       rlang_1.0.5         evaluate_0.16
scCATCH • 104 views
ADD COMMENT
1
Entering edit mode
@james-w-macdonald-5106
Last seen 6 hours ago
United States

This support site is intended to help people who have problems with Bioconductor packages, and scCATCH is not a Bioconductor package. You might try biostars.org or stackoverflow.com, or simply r-help@r-project.org.

1
Entering edit mode

Also, fyi, what you have provided is not nearly enough information for anybody to help you. You should provide either a self-contained example that results in the error, or the output from running traceback() immediately after the error.

Login before adding your answer.

Traffic: 355 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6