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Hi there,
I just got a problem with methRead function in the R package Methylkit, hope you guys can help me:)
This is my CpG dataset:
My code is as followed:
setwd("/data/Users/llp/worl/RRBS/cov")
file.list=list("P1_1.txt","P1_2.txt","P7_1.txt","P7_2.txt")
myobj=methRead(file.list,
sample.id=list("P1_1","P1_2","P7_1","P7_2"),
assembly="mm10",
treatment=c(0,0,1,1),
context="CpG",
mincov = 5)
Here is the wrong message I keep receiveing:
Error in validObject(.Object) :
invalid class “methylRaw” object: superclass "vector_OR_Vector" not defined in the environment of the object's class
Thank you very much in advance!
Elaine liu
I made it !
update S4Vectors from 0.20.0 to 0.24.4 & BiocGenerics from 0.30.0 to 0.32.0, it works~