Bioconductor Methylkit

Showing : methylkit • reset

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226

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methylKit

3 months ago Andrés • 0

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446

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methRead methylkit

11 months ago liulip • 0

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535

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methyl methylKit

20 months ago hasche • 0

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1.2k

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GenomicRanges methylKit S4Vectors

updated 20 months ago by James W. MacDonald 64k • written 20 months ago by hasche • 0

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928

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methylkit

updated 2.1 years ago by alex.gos90 ▴ 10 • written 2.5 years ago by hasche • 0

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831

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methylation methylKit bsseq

updated 2.1 years ago by alex.gos90 ▴ 10 • written 2.4 years ago by ag1805x ▴ 80

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856

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annotateWithGeneParts methylKit

2.2 years ago tanmayroy1979 ▴ 20

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1.0k

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methylkit normalizecoverage NA

updated 5.1 years ago by altuna akalin ▴ 20 • written 5.1 years ago by GFM ▴ 20

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1.0k

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R bioconductor methylation methylkit

updated 5.4 years ago by altuna akalin ▴ 20 • written 5.4 years ago by nilaycan • 0

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1.3k

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methylkit Tutorial

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by s1432985 • 0

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1.6k

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methylKit

updated 6.4 years ago by altuna akalin ▴ 20 • written 6.4 years ago by ch8316f5eyu • 0

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1.6k

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methylKit

6.5 years ago kamal.fartiyal84 ▴ 10

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1.4k

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methylKit bioconductor

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by tangming2005 ▴ 190

13 results • Page 1 of 1

Recent ...

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Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k

If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…

Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0

Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k

That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…

Votes

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Answer: trying to add SingleR label to Seurat Object fails

Comment: DESeq2 - groups with biological replicates from the same patient

Answer: EdgeR: Exact test and glmQLFTest produce very different results

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k