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methylkit
•
reset
0
votes
0
replies
397
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
7 months ago
Andrés
• 0
0
votes
1
reply
548
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
15 months ago
liulip
• 0
0
votes
0
replies
620
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
24 months ago
hasche
• 0
0
votes
6
replies
1.4k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
hasche
• 0
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
hasche
• 0
0
votes
1
reply
1.0k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.7 years ago by
ag1805x
▴ 80
2
votes
1
reply
1.0k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.5 years ago
tanmayroy1979
▴ 20
0
votes
2
replies
1.1k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.4 years ago by
altuna akalin
▴ 20 • written 5.4 years ago by
GFM
▴ 20
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.7 years ago by
altuna akalin
▴ 20 • written 5.7 years ago by
nilaycan
• 0
0
votes
3
replies
1.5k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
s1432985
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.7 years ago by
altuna akalin
▴ 20 • written 6.7 years ago by
ch8316f5eyu
• 0
0
votes
2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.8 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.5k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
tangming2005
▴ 190
13 results • Page
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Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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