GOplots::GOChord with heatmaps?
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@adrijakalvisa-22810
Last seen 21 months ago
Denmark

Hi all, is there a way to add a gene expression heatmap option to GOplots::GOChord plot? Or multiple heatmaps at once?

An example Chord plot: Fig 6 in PMID: 33674625. Fig 6 in PMID: 33674625.

Here is what I tried:

library(GOplot)
data(EC)
circ <- circle_dat(EC$david, EC$genelist)
chord <- chord_dat(data = circ, genes = EC$genes, process = EC$process)
chord$logFC2 = sample(chord$logFC)
my_test_plot = GOChord(chord, gene.order = 'logFC')
my_test_plot

However, there are no explicit options for heatmaps. Is there a workaround for this?

GOChord ggplot2::geom_polygon() GOplot ggplot2 • 1.3k views
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