In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene

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S • 0

@0b4d0d5b

Last seen 3 months ago

Norway

Can someone clarify which is the exact matrix on which eigen decomposition is run in WGCNA to find the module eigengene?

Thanks again for the clarification!

WGCNA • 671 views

ADD COMMENT • link updated 22 months ago by andres.firrincieli ▴ 50 • written 23 months ago by S • 0

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cross-posted on r/bioinformatic:link

To calculate the module eigengenes with moduleEigengenes() will need the normalized expression data and the modules (colors). For more information check this link

ADD REPLY • link 22 months ago andres.firrincieli ▴ 50

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