input for singR function
0
0
Entering edit mode
Paria • 0
@8df4a822
Last seen 21 months ago
Canada

Hello everyone, I am trying to run singleR for my Seurat object. However, not sure what the input format should be. I read somewhere that it should be SingleCellExperiment (http://bioconductor.org/books/release/SingleRBook/using-the-classic-mode.html#annotating-the-test-dataset) and somewhere else it says SummarizedExperiment (https://bioconductor.org/packages/devel/bioc/vignettes/SingleR/inst/doc/SingleR.html). Not sure what is the difference. I greatly appreciate any comments! Paria

Seurat_object singe-cell singleR • 671 views
ADD COMMENT

Login before adding your answer.

Traffic: 526 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6