Biostar SingleR

Showing : singleR • reset

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SingleR

updated 21 days ago by ATpoint ▴ 710 • written 21 days ago by ntourtillott23 • 0

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122

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SingleR

updated 5 weeks ago by Kevin Blighe 3.2k • written 5 weeks ago by Imtiaz • 0

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202

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SingleCellSignalR SingleCellWorkflow SingleR

updated 11 weeks ago by Aaron Lun ★ 27k • written 11 weeks ago by keqiao • 0

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307

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SingleR ImmgenData() mouseRNAseqData()

updated 5 months ago by Mike Smith ★ 5.0k • written 5 months ago by Collins • 0

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202

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SingleR

updated 5 months ago by Aaron Lun ★ 27k • written 5 months ago by amel.zulji • 0

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268

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cellsubset SingleR SingleCellExperiment

7 months ago achaillon • 0

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572

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singleR rowMedians getMethod

updated 9 months ago by bongowongo • 0 • written 9 months ago by inzirio ▴ 10

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269

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SingleR Single Cell

updated 10 months ago by Aaron Lun ★ 27k • written 10 months ago by w.gus.dunn • 0

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476

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singlecell singlecellexperiment umap singleR

updated 11 months ago by Aaron Lun ★ 27k • written 11 months ago by lirongrossmann ▴ 60

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243

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single cell celldex singleR

updated 11 months ago by Aaron Lun ★ 27k • written 11 months ago by lirongrossmann ▴ 60

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260

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singlecell singleR

updated 11 months ago by Aaron Lun ★ 27k • written 11 months ago by lirongrossmann ▴ 30

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218

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singleR singlecell

updated 11 months ago by Aaron Lun ★ 27k • written 11 months ago by lirongrossmann ▴ 30

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469

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singleR singlecell singlecellexperiment

updated 11 months ago by Aaron Lun ★ 27k • written 11 months ago by lirongrossmann ▴ 30

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830

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ExperimentHub AnnotationHub SingleR

updated 12 months ago by shepherl 2.8k • written 12 months ago by enricoferrero ▴ 570

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201

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singler bug

16 months ago muad.abdelhay ▴ 10

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139

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SingleR MouseGastrulationData

updated 16 months ago by Aaron Lun ★ 27k • written 16 months ago by jma1991 ▴ 60

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223

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single cell R SingleR

updated 18 months ago by Aaron Lun ★ 27k • written 18 months ago by k.vitting.seerup ▴ 100

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283

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SingleR

updated 19 months ago by Steve Lianoglou 13k • written 19 months ago by bony.dekumar • 0

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456

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seurat singleR

updated 20 months ago by Gordon Smyth 43k • written 20 months ago by mathai.c • 0

19 results • Page 1 of 1

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Comment: WGCNA adjust p value by Kevin Blighe 3.2k

Cross-posted: https://www.biostars.org/p/9482927/

Comment: Unique GPos taking into account mcols by Marcel Ramos 540

Hi @maltethodberg We currently do not have a method that does this. Perhaps a `duplicated` method is appropriate but I am not the develop…

Comment: What are these genes ? [How to get Ensembl IDs for them] by abf ▴ 30

Mouse genes are not typically all capitals, but I was able to find a reference to a mouse gene in NCBI to [CH36-217G15][1]. Maybe this is …

Comment: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db. by abf ▴ 30

I should note that when I query org.Mm.eg.db using the gene Symbols associated with my differential expression data I find a 1:1 correspond…

Comment: Best practice for quantifying sncRNA by James W. MacDonald 57k

That question is about GeneGlobe, which is a Qiagen product. I would recommend going to their site and figuring out for yourself.

Votes

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Answer: What lfcSE is dependent upon?

Comment: P value and Adj. P value showing N/A

Answer: P value and Adj. P value showing N/A

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