No BSgenome for Human HG19 or HG38 with R version 4.2.2 and Bioconductor 3.16
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aubin • 0
@aac4f0b4
Last seen 13 months ago
France

Hello,

I'm currently trying to install BSgenome.Hsapiens.UCSC.hg19 and BSgenome.Hsapiens.UCSC.hg38 through bioconductor on my desktop (Windows) My current R version is 4.2.2.and bioconductor is 3.16

My command is this one:

```r

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19") ```r

and as answer I have :

Warning message: package ‘BSgenome.Hsapiens.USCS.hg19’ is not available for Bioconductor version '3.16'

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

Would you have any advice to be able to install these packages? Thanks in advance

BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major • 830 views
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@james-w-macdonald-5106
Last seen 1 day ago
United States

You say you did

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

But R says you actually did

BiocManager::install("BSgenome.Hsapiens.USCS.hg19")

The first should work, the second will not, because it's UCSC, not USCS.

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I'm stupid. Thanks a lot.

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