Help with error running DiffBind
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Chris • 0
@3fdb6f97
Last seen 17 hours ago
United States

Hi all, I used a different reference genome to align instead of GRCh38 and got this error:

result <- dba.blacklist(result) 

Genome detected: Hsapiens.1000genomes.hs37d5 Applying blacklist... No blacklist found for BSgenome.Hsapiens.1000genomes.hs37d5 No control reads specified, unable to generate greylist. No intervals removed.

result <- dba.blacklist(result, blacklist = BSgenome.Hsapiens.1000genomes.hs37d5) 

Error in dba.blacklist(result, blacklist = BSgenome.Hsapiens.1000genomes.hs37d5) : object 'BSgenome.Hsapiens.1000genomes.hs37d5' not found

Would you have a suggestion? I have this file hg38-blacklist.v2.bed but don't know how to download blacklist file for BSgenome.Hsapiens.1000genomes.hs37d5. Thank you so much!

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