Question

Interpret plots from DiffBind

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Chris ▴ 20

@3fdb6f97

Last seen 3 months ago

United States

Hi all, I have 4 samples which are 4 conditions but when I made some plots, I got only 2 conditions. enter image description here !

Does this plot mean ws has chromatin more chromatin open (gain) than wf sample? When I rerun the code, I got all 4 conditions but the plot is quite different. There are no gain and loss but only sites. Thank you so much! enter image description here

DiffBind • 1.2k views

ADD COMMENT • link 17 months ago Chris ▴ 20

score 1 · Answer 1 · 2023-06-26

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Rory Stark ★ 5.2k

@rory-stark-5741

Last seen 5 weeks ago

Cambridge, UK

This is duplicated on Biostars with discussion: https://www.biostars.org/p/9566493/#9567480

ADD COMMENT • link 17 months ago Rory Stark ★ 5.2k

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Hi Rory Stark, after I run all the code (post-analysis), when I plot, I got only 2 samples which I don't know why. Would you have a suggestion?

ADD REPLY • link 17 months ago Chris ▴ 20