DGE analysis for diseased samples through DESeq2 and Ballgown
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Bushra • 0
@9eef20e1
Last seen 15 months ago
Pakistan

I have diseased and normal samples. How will DGE analysis tools DESeq2 and Ballgown know that they have to analyse differentially expressed genes from diseased samples comparing diseased with normal. Where I need to set in DESeq2 and Ballgown? Kindly provide suggestions for both DGE analysis tools.

Your help will be highly appreciated.

DESeq2 DGEanalysis ballgown Ballgown DiseasedvsNormal • 632 views
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ATpoint ★ 4.5k
@atpoint-13662
Last seen 13 hours ago
Germany

Please read the vignette, it covers the basics in great detail. https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html

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Thank you so much for sharing the manual ATpoint. It solved the problem.

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