DGE analysis for diseased samples through DESeq2 and Ballgown
1
0
Entering edit mode
Bushra • 0
@9eef20e1
Last seen 15 months ago
Pakistan

I have diseased and normal samples. How will DGE analysis tools DESeq2 and Ballgown know that they have to analyse differentially expressed genes from diseased samples comparing diseased with normal. Where I need to set in DESeq2 and Ballgown? Kindly provide suggestions for both DGE analysis tools.

Your help will be highly appreciated.

DESeq2 DGEanalysis ballgown Ballgown DiseasedvsNormal • 619 views
ADD COMMENT
1
Entering edit mode
ATpoint ★ 4.5k
@atpoint-13662
Last seen 3 hours ago
Germany

Please read the vignette, it covers the basics in great detail. https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html

ADD COMMENT
0
Entering edit mode

Thank you so much for sharing the manual ATpoint. It solved the problem.

ADD REPLY

Login before adding your answer.

Traffic: 768 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6