Hi I am running featureCounts() function from Rsubread package with my aligned dataset. I am using HPC clusters to perform the task.

my Rscript looks something like this.

fc <- featureCounts(files=fileNames,
                    annot.ext=file.path("/lustre/project/jfang5",
                                        "Homo_sapiens_GRCh38",
                                        "Homo_sapiens.GRCh38.105.gtf"),
                    isGTFAnnotationFile=TRUE,
                    GTF.attrType.extra = "gene_biotype", # classifies coding genes
                    isPairedEnd=TRUE,
                    GTF.featureType = "exon",
                    requireBothEndsMapped = T,
                    primaryOnly = T,
                    countChimericFragments = F)

But I am continuously getting errors as follows (I submitted the job by both interactively and with Slurm but either way is giving this error) :

Fatal error: Wrong thread calling 'RunFinalizers'

Fatal error: Wrong thread calling 'RunFinalizers'

Fatal error: Wrong thread calling 'RunFinalizers'

Fatal error: Wrong thread calling 'RunFinalizers'

Fatal error: Wrong thread calling 'RunFinalizers'

Fatal error: Wrong thread calling 'RunFinalizers'

Segmentation fault...

Can somebody help me with what is going wrong with this? Thank you in advance!!