Entering edit mode
I got an error using subread v 2.0.6 Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c, line 4672. zsh: abort featureCounts -O -T 8 -a stringtie_output/concat_output/concat_output.gtf -o
I checked the integrity of my bam file and it looks good. I am trying to use a GTF file obtained from Stringtie with the -e and -B flags.
Would greatly appreciate advice.