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Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
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alserg
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280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
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When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…
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Guido Hooiveld
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The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …
Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19)
by
ja.garcia
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0
It has been fixed by the Rbowtie2 maintainers in version 2.12.2.
Thank you for the quick fix!
Comment: contrast matrix design for a continuous variable
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Hi Gordon,
Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…
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