Question

DiffBind dba.analyze function doesn't have bSubControl option anymore?

0

Entering edit mode

r.murakami • 0

@40ed7bed

Last seen 12 months ago

Japan

Hi,

DiffBind (v3.4.11) dba.analyze function doesn't have bSubControl option anymore? dba.analyze function (bGreylist=FALSE, bSubcontrol=TRUE) makes an error.

If you have some information, I appreciate it.

DiffBind • 661 views

ADD COMMENT • link 14 months ago • updated 13 months ago r.murakami • 0

score 2 · Accepted Answer · 2023-10-06

2

Entering edit mode

Rory Stark ★ 5.2k

@rory-stark-5741

Last seen 5 weeks ago

Cambridge, UK

The bSubControl parameter has been moved to the dba.count() interface function.

ADD COMMENT • link 14 months ago Rory Stark ★ 5.2k

0

Entering edit mode

Hi Rory,

Thank you for your information. I have another question. If we run dba.analyze (bGreylist=FALSE) after dba.count(bSubcontrol=TRUE), does DiffBind returns differential binding regions using the count data subtracting control Input counts ?

Thank you,

Ryuichi

ADD REPLY • link 13 months ago r.murakami • 0