Hi all!

I am trying to use my results list from DESeq2 analysis to conduct a GSEA analysis. I want use a ranked list of genes, but I am not sure the best parameter to rank them. I'm wondering what is the most generally accepted way: adjusted p value, stat, or log2FoldChange? Any information would be much appreciated!

Thank you for your help!

See the vignette, it suggests the shrunken (lfcShrink) logFC for this.